Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1817 ATGGCTCCTTCCCGCCGCAACACCAACGGTCGATCACCGCTCGTCAATCAACAGAGTCAAATCACTTCCTTCTTCACCAAATCCGCTTCCCCTTCGCCCTCTCCCACTCTCTCCAAAACCAACCCTAACCCTAACCCTAACCCTAACCCTAGTCCCACCCCTGCTACTCCTTCTCCTCTCAATCCCAAACGCTCCAAGCCCCTTCTTGTAATCGGCGCTTCCACTTCTCCACCCTCCGCTTCGCCTTCTCTCTACTTTCAAGAGCTCATTGGCCGAAGGATCAAGGTTTATTGGCCCTTGGACAAAGCCTGGTACGAAGGCTCCGTCAAATCCTTCGATAGCCTCACCTCTAAGCACGTGGTTCGTTACGACGATGGCGAAGAAGAATCCCTCGACCTCTCCAAGGAGAAGATCGAGTGGCTTCAGGAATCGTCTTCCAAGAAACTTAAACGCCTGCGTCGCGGCGTCCCCGCCGTTAGGAAGATGATGATCGACGACGACGACGAAGAAGTTGAAGAAGAAGAAAGTCACAAAAAAGATGATGATGATGATGATGATTCCAATGACGAAGATTGGGGGATGAAGGCTGCATTGGAGGATGCTGGGGATGCCGAAGAAGATACGGATTTAGAGGATGAAAACGACGTGGCAGAGAGGGCTAAAGGGAAAAAGGTAGAGACTAAAAAGCGGAAACTAAGCGGAACAGAGAAACAAGAGCCGGCAAAAAAGAGCAAGAGTGGAGTGGAAGTTGGTAAGGGAGCTTTCAAGCTCTCAGTGTTGGAGCCTACGAGTAATTTGGAGATTAAAGAGACATCTAATGGCACTGACAATGTTGCGATTACTGAGATCTCTGAAAGATTTGCACTGCGTGAAGCTCAGAAATTGCGCTTCCTGAAGGAAGATCGCAGGGATGCCAAGCGAAGGCGACCAGGGGATGAAAATTATGATTCAAGAACAATCTACTTGCCTCCTGATTTCTTAAGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGTGCGAAAGAGCTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAATTTCTCAATGAACGTGGAGAAACTAGCTAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGCAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAAATATGTTCAGTGGTTACAAAAGGTACATTAACAGATGGGGAGTTGCTGTCAGCAAACCCAGAAGCTGCATATTTAATGGCCCTGACGGAGCATCACGAAAATCACCCAACTGAAGTTTCAGAGCATCTCTATGGTGTTTGTATAGTTGATGTTGCCACAAGTAGAGTCATTCTTGGACAGTTTAAGGATGACTTGGAGTGCAGTGTCTTGTGCTGTATCTTATCTGAGATCAGGCCTGTTGAAATTGTGAAACCTGCTAAACTACTCAGTGCTGAAACGGAGAGAGTACTGCTGAAGCATACCAGAGATCCTTTAGTGAATGAATTAGTTCCAATTGTGGAATTCTGGGATGCTGACAAAACTGTGGATCAATTAAAGAGAATTTATGGGAACTCTAATGATGTTAGTGTTAACAATAATGAGTTAGATTGCCTGCCAGATGTTTTACTGGAGCTGGTGAAAACAGGTGACGACAGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTGTATTATCTGAGACAGGCTTTTCTAGATGAGAGATTGCTTAGATTTGCAAAGTTTGAGTTACTTCCTTGTTCTGGTTTTGGTGATCTTGCTTCAAAACCCTACATGGTTCTTGACGCGGCTGCCCTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCAGGCACGCTCTATGCCCAACTAAACCAATGCGTTACTGCTTTTGGAAAGAGATTGCTAAAGACTTGGCTTGCAAGACCATTATGTCATGTGGAGTCAGTTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCTTCTGCACTAGAATTTCGAAAAGCATTATACAAGCTACCTGACATGGAGCGGTTGCTTGCCCGCATCTTTTCCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAGAGTGGTTCTGTACGAGGATGCTTCTAAGAAGCAACTGCAAGAGTTTATTTTAGCTCTGCGTGGTTGTGAACAGATGGCTCAAGCATGCTTTTCACTTGGTGTCATTTTGAGTCATGTAAAATCTAGACAACTTCATCATCTGTTAACACCGGGTAAAGTTCTTCCTGATGTTTGTATGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAATTCTGGGCGTATAATACCTCGTGAAGGAGTTGACACAGAGTATGACTCAGCCTGTAAGGCGGTTAAAGAGATTGAGTCCAGTTTATTGAAGCATCTTAAGGAACAAATGAAACTACTTGGAAGCACATCAATTACTTATGTCAATGTTGGAAAGGATACATACCTATTGGAAGTTCCAGAAAATTTGTCTAAGAATATTCCTCGAGATTATGAACTGCGCTCATCCAGAAAAGGCTTCTTTAGATACTGGTCTCCAGATATTAAAGTTTTCTTAAGAGAGCTCTCCCATGCTGAATCTGAAAAGGAGTCCTTGTTGAAAAGTACATTGCAGAGATTAATTGGGCGTTTTTGTGAACATCACGCTAAGTGGAAGCAGTTGGTGTCTACAACTGCAGAACTGGATGTCTTGATCAGTTTAGCAATTGCTGGTGACTACTATGAAGGACCAACATGTAGACCTAGTTTTGTAGGCACATTATGTACAAAAGAAGCTCCTTACCTCCATGCCAAAAGTTTGGGACACCCAGTCCTTAGGAGTGATACCTTAGGCAAGGGTGACTTTGTACCCAATGACATAACCATTGGTGGTTCAGATCATGCTAGCTTTATTCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACCCTTCTTCGTCAAGTTTGCTTGACTGTGATTTTGGCCCAGGTAGGAGCTGATGTCCCAGCAGAAAGTTTTGATTTGTCCCCTGTTGACCGGATTTTTGTTAGAATGGGGGCCAAAGATAATATAATGGCAGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCATCAATGCTGTCATCAGCTACTTGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACTGCAACTTCTGATGGGCAAGCCATTGCGGAATCAGTATTAGAACATCTTGTGCGGAAGGTGCAGTGTCGCGGATTGTTTTCTACCCACTATCATCGATTAGCTGTTGATTATCTCAAAGATCCGAAGGTCTGTCTCTGCCACATGGCATGCCAAGTTGGTAGTGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTTACCCCCGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGGATAGCTGGCCTTCCAACTTCTGTGCTTCAGAAGGCTGCTGCCAAATCCAGAGAATTTGAGGCCACTTATGGTAAATGCAGAAAGGTATCTACTGTAACAAACTCTCCCAATAAAAATTGGGTTGATGAGATAGCAGCAATCATTCAAATATTGAACAACGCGGCAACACAGGAAACCATTTGCGTTGGTTCCCTAAGTGAACTTCAGGATAAAGCAAGAGAACTAATGCAAGGATGTTAA 3822 0.4427 MAPSRRNTNGRSPLVNQQSQITSFFTKSASPSPSPTLSKTNPNPNPNPNPSPTPATPSPLNPKRSKPLLVIGASTSPPSASPSLYFQELIGRRIKVYWPLDKAWYEGSVKSFDSLTSKHVVRYDDGEEESLDLSKEKIEWLQESSSKKLKRLRRGVPAVRKMMIDDDDEEVEEEESHKKDDDDDDDSNDEDWGMKAALEDAGDAEEDTDLEDENDVAERAKGKKVETKKRKLSGTEKQEPAKKSKSGVEVGKGAFKLSVLEPTSNLEIKETSNGTDNVAITEISERFALREAQKLRFLKEDRRDAKRRRPGDENYDSRTIYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICSVVTKGTLTDGELLSANPEAAYLMALTEHHENHPTEVSEHLYGVCIVDVATSRVILGQFKDDLECSVLCCILSEIRPVEIVKPAKLLSAETERVLLKHTRDPLVNELVPIVEFWDADKTVDQLKRIYGNSNDVSVNNNELDCLPDVLLELVKTGDDSRSALSALGGALYYLRQAFLDERLLRFAKFELLPCSGFGDLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESVKERQEAVAGLKGVNLPSALEFRKALYKLPDMERLLARIFSSSEASGRNANRVVLYEDASKKQLQEFILALRGCEQMAQACFSLGVILSHVKSRQLHHLLTPGKVLPDVCMDLNHFKDAFDWVEANNSGRIIPREGVDTEYDSACKAVKEIESSLLKHLKEQMKLLGSTSITYVNVGKDTYLLEVPENLSKNIPRDYELRSSRKGFFRYWSPDIKVFLRELSHAESEKESLLKSTLQRLIGRFCEHHAKWKQLVSTTAELDVLISLAIAGDYYEGPTCRPSFVGTLCTKEAPYLHAKSLGHPVLRSDTLGKGDFVPNDITIGGSDHASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLSSATCNSLVALDELGRGTATSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAVDYLKDPKVCLCHMACQVGSGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAAKSREFEATYGKCRKVSTVTNSPNKNWVDEIAAIIQILNNAATQETICVGSLSELQDKARELMQGC* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1817 1273 SUPERFAMILY DNA repair protein MutS, domain III 641 962 IPR036187 -
Gso19g1817 1273 MobiDBLite consensus disorder prediction 37 61 - -
Gso19g1817 1273 SUPERFAMILY DNA repair protein MutS, domain II 452 653 IPR036678 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 Pfam MutS domain II 457 609 IPR007860 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 Gene3D DNA repair protein MutS, domain I 289 450 IPR016151 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 CDD TUDOR 91 135 IPR002999 -
Gso19g1817 1273 Pfam MutS domain V 1023 1213 IPR000432 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 MobiDBLite consensus disorder prediction 1 82 - -
Gso19g1817 1273 Gene3D - 638 959 - -
Gso19g1817 1273 SUPERFAMILY Tudor/PWWP/MBT 88 130 - -
Gso19g1817 1273 SUPERFAMILY DNA repair protein MutS, domain I 319 442 IPR016151 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 SMART DNAend 658 999 IPR007696 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 MobiDBLite consensus disorder prediction 1 36 - -
Gso19g1817 1273 Pfam MutS domain III 644 959 IPR007696 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 Gene3D - 80 140 - -
Gso19g1817 1273 MobiDBLite consensus disorder prediction 214 246 - -
Gso19g1817 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 982 1214 IPR027417 -
Gso19g1817 1273 Pfam MutS family domain IV 828 919 IPR007861 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 Gene3D - 804 935 - -
Gso19g1817 1273 Pfam MutS domain I 334 446 IPR007695 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 SMART mutATP5 1019 1211 IPR000432 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 233 1231 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Gso19g1817 1273 Gene3D MutS, connector domain 455 632 IPR036678 GO:0005524|GO:0006298|GO:0030983
Gso19g1817 1273 SMART TUDOR_7 86 144 IPR002999 -
Gso19g1817 1273 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 233 1231 - -
Gso19g1817 1273 PIRSF Msh6 2 1257 IPR017261 GO:0006298|GO:0030983
Gso19g1817 1273 MobiDBLite consensus disorder prediction 166 190 - -
Gso19g1817 1273 MobiDBLite consensus disorder prediction 144 248 - -
Gso19g1817 1273 Gene3D - 970 1246 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1817 Gso-Chr19 46903294 46913415 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1817 K08737 - gmx:100811104 2383.99