Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1790 ATGGCCTCTGCATCCTCCTTATCAGTTTCTCTAGAATGCGTGAACGCCTGCAAGCCGTGGAGAGGGGATGGAAATGTAAGATTCGACTGTAGTCTTCTATCGTGCGCGTGGAAAGCTCCGAGGGCTCTCACCGGGTTCCTTGCCAGCACTGCTCATCCTCATCAGTGTTCGAACTTGTCGAATGGGCGTAATGGACGAAGGAACCGGTATAATTTTGGGTGTGAAGCCTTTAGTGTAGGTGGTTCATGCCATGATGAACCACTTGATATCATACTTTTTGAAGGATACTCTAGATCTATCTCGTGCCAAAATGCTCCTAGGAGATGGCAATTGTGTTGTTCTTTGGCCTCGAACACTGTCACTGAGTTTTCCGCGGAAAGTTTGTGGGAGGATCTTAAACCTGCTATCTCGTACCTGTCACCTAAAGAACTGGAGTTAGTCTACAATGCTTTTATGTTGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTCGAGGTTGCACGCATTCTGGGAGAACTTGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGGCACATTGTGGAAGGAGAGACCAAGGTGTCGAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTGCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAGACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCGTTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATGTTGATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACGGTTAAAACGAAAGTTCGTGCTGTATGTAAAGAGCCTTACAGTATCTATAAAGCTGTTCTCAAATCAAAAAGTTCAATCAGTGAGATTAACCAAATTGCACAGCTTCGCATTATTATTAAACCAAAGCAATGCATTGGGGTTGGGCCTTTATGCAACCCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACAGGGTTGGTTGGAAGTGCAACACCAAGTAGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTAAACAACGCCAATATTGCCCTGAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTCGACACCATTACAAGAGATCTGCTGGGCAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTATATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCAAAGGTCAATGGCAATCTTGTTTCTCCTGCTCATGTACTTGCAAATGCAGAAGTTGTAGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCCTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCAAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCTGCTGATATCACTACGGAAGCAGTCAATGACTTTGTCACTGATTCTGACGGGGATAGTGAATCTGAAGAACTGTCAAAAGGTTCCAGTGGCTCTAAATATACGTGGGGTAAAATGTTTGTGAATGGAGCCGAAATATCAACTTTAGGAAGAAGTGAGACCGTCCTCCAAAGTAACAATGGAAGTGCTTGGATCCCCAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGAAAGTTTCAACGGCAAAGGGGAGATGTTACTGCAGGGAAACCTTGTCGCAAAGATAATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAGGCATGATGGCTGAGGTCACTGCAGCAATGGCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCATGTAGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTGGATCTGATACTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTGATGGAAGACCGTGGAGTTCTCGAATGCTAG 2649 0.4341 MASASSLSVSLECVNACKPWRGDGNVRFDCSLLSCAWKAPRALTGFLASTAHPHQCSNLSNGRNGRRNRYNFGCEAFSVGGSCHDEPLDIILFEGYSRSISCQNAPRRWQLCCSLASNTVTEFSAESLWEDLKPAISYLSPKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKMLMKKIQDDQFLDLLTVKTKVRAVCKEPYSIYKAVLKSKSSISEINQIAQLRIIIKPKQCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLQTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPAHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVTDSDGDSESEELSKGSSGSKYTWGKMFVNGAEISTLGRSETVLQSNNGSAWIPKVNGKHNKHVQHESFNGKGEMLLQGNLVAKIIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRKGMMAEVTAAMATAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDRGVLEC* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1790 882 CDD NT_Rel-Spo_like 366 486 IPR007685 GO:0015969
Gso19g1790 882 ProSiteProfiles HD domain profile. 169 276 IPR006674 -
Gso19g1790 882 Pfam Region found in RelA / SpoT proteins 376 492 IPR007685 GO:0015969
Gso19g1790 882 Pfam HD domain 150 307 - -
Gso19g1790 882 CDD HDc 167 298 IPR003607 -
Gso19g1790 882 SMART RelA_SpoT_2 376 498 IPR007685 GO:0015969
Gso19g1790 882 Gene3D Hypothetical protein af1432 123 322 - -
Gso19g1790 882 CDD ACT 796 851 - -
Gso19g1790 882 Pfam TGS domain 563 622 IPR004095 -
Gso19g1790 882 Gene3D - 556 631 IPR012675 -
Gso19g1790 882 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 882 - -
Gso19g1790 882 SUPERFAMILY Nucleotidyltransferase 326 496 IPR043519 -
Gso19g1790 882 MobiDBLite consensus disorder prediction 674 693 - -
Gso19g1790 882 SUPERFAMILY ACT-like 795 854 IPR045865 -
Gso19g1790 882 SMART hd_13 165 285 IPR003607 -
Gso19g1790 882 ProSiteProfiles TGS domain profile. 559 622 IPR004095 -
Gso19g1790 882 Coils Coil 331 358 - -
Gso19g1790 882 Gene3D Beta Polymerase, domain 2 324 478 IPR043519 -
Gso19g1790 882 CDD TGS_RSH 564 622 IPR033655 -
Gso19g1790 882 SUPERFAMILY TGS-like 550 622 IPR012676 -
Gso19g1790 882 Gene3D - 795 861 - -
Gso19g1790 882 SUPERFAMILY HD-domain/PDEase-like 134 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1790 Gso-Chr19 46654103 46662109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1790 179 494 EF-hand Containing Proteins AT3G17470 30.061 1.43e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1790 K00951 - gmx:100814134 1722.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1790 19 46654103 46662109 Gso3g1824 3 43896232 43904298 GST