Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1760 ATGGCTGTGGTTGCAGTGCAGCAATTCCAGTGCTTCACAGAATCAAATTGGAGAAATATAACAAGGCCATGCATTCCCCCTCACAGTTCACTTCTTCTACGTTCACGCAACAAGATTCAAATTTCTCTGATTTCATGCTCTTCATCACAGACCCCAGAAGCTGATACACAAACTGCTGAATCTTGCGTCAATTTGGGTCTTGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCTGTTTGAAACAGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCTGCGTACTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACGATCTAAAATTTGGTACAATTCTCAATGATCCTGACTTGGCCTCCTTCAGAGTTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATCGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTCCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCATTTACTGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCCAGGCTATTGCGTGCAATTAATGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATCGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTCGCACAAATATCTCGAGACGAGACACTATCAAGGTTGCCTTTGTGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTACGGGATACAGTTCGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTTTCTTTGGCTATGCAAAGAGCAGAGAGATTTCAAACTGAGCTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTTATTTGGGGAGAAGGTCAGGAAACAAAACTAGAGAAAAAAGGTTTTGGCCTAAAGCCAAAGGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGAGAGCACAGTCCATAACTGCAAAATCAAAGTTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTGTATCACCAGTGGAATGGGAACGGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTTTCACTTGGTGAAGACGTGTACATAATACTTCGCTTAGATGGACGGGTTCGAAGATCAGGGAAGGGTATGCCTGATTGGCAGCAAATTGTGAAGGAGCTACCACCAAAGGAAGCATTTTTAAGCAAGATAGAAAGATGA 1314 0.4346 MAVVAVQQFQCFTESNWRNITRPCIPPHSSLLLRSRNKIQISLISCSSSQTPEADTQTAESCVNLGLELFSKGRVKDALTLFETALSLNPNPVEAQAAYYNKACCHAYRGEGKKAADCLRTALREYDLKFGTILNDPDLASFRVLPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTVPRLLRAINGGDGAPDLLATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLCLSTNRVVELVQLRDTVRPVILAGKKETVSLAMQRAERFQTELLRRGVLLVPVIWGEGQETKLEKKGFGLKPKAAEALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPVEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPKEAFLSKIER* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1760 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Gso19g1760 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Gso19g1760 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Gso19g1760 437 Gene3D Tetratricopeptide repeat domain 46 142 IPR011990 GO:0005515
Gso19g1760 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 37 437 - -
Gso19g1760 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 37 437 - -
Gso19g1760 437 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
Gso19g1760 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Gso19g1760 437 SUPERFAMILY TPR-like 53 125 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1760 Gso-Chr19 46432550 46436667 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1760 - - gmx:100793204 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1760 19 46432550 46436667 Gso3g1793 3 43688060 43692155 GST