Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1756 ATGGCGGGTTGGGAGAGGGCTGCGATTCTTGTTCTGCTTAAGGAATCCTGCCGTAGCCAGAAGCAGGTTCGAGAAATTCAAGCGCAGCTCATCCTCCAGAAAATCTACCCAAACACCAGAGTCGCTCAACACTTCATCGGTGCGTGCCAATCACACGGCCTTCTCAACACTGCTCTTGTTCTCTTCACCACCCTCCTCCCCCACCCCCACGTCTACACCTTCAACACCCTCATCAGAGTCTTCTCCCAATCCCTTACCCCGCACACCCCTCTCTTCATCTACACCCACATGCGCCGCTACTCCCTCCTCCCCAACAACTTCACTTTCCCTCCCCTCTTCAAGTCCCTCTCCGACACCCGCCAAGTCACCCAGGCGCAATGCGTCTACACCCACGTCCTCAAACTCGGCCACCACCAAGATATCTACGTCCGCAACTCCCTCCTCGACGTCTACGCCTCGTGCGGCCACTTCGCATTGTGTCGCCAACTGTTCGATGAAATGCTTCACAGGGATGTTGTGTCCTGGAGCGTGTTGATCACTGGGTACAACAGCGTTGGCGGCTACGACGATGCCTTGGTTGTCTTTGAACAGATGCAGTATGCGGGGTTTGTTCCTAATAGGGTCACGATGATAAACGCGTTGCACGCTTGTGCTCACTCTGGGAATGTTGACATGGGGGCGTGGATACATGGTGTCATAAAGAGGGAGGGTTGGGAATTGGATGTGGTATTGGGGACGGCGCTGATTGATATGTATGGGAAGTGTGGGAGAGTGGAAGAGGGGTTGAATGTGTTCCGGAGCATGAAGGAGAAGAATGTGTTTACTTGGAATACGGTTATTAAAGGGCTAGCTTTGGCCAAGAGTGGACAAGAAGCAATTTGGTGGTTTAACAAAATGGAGAAAGATGGAGTTAGACCGGATGAAGTGACTTTGTTGGCGGTGCTATCTGCGTGCAGTCACTCGGGTTTGGTGGACATGGGTCGAGAGATTTTTGGTTTGTTGGTTGATGGGAGGTACGGGTGTTGTCCTAATGTCATACACTATGCTTGCATGGTTGACGTGTTGGCGCGTTCTGGGCGTTTGAAAGAGGCTGTTGAGTTCATGGGATGTATGCCTTTTGGACCCACCAAGGCTATGTGGGGATCGTTGTTGGTTGGTTCTAAAGCTCAGGGTGACTTGGAGTTGGGTCTGCTAGCGGCTGGAAAGCTCATTGAATTGGAGCCGGATAACACTGCATATTATGTTCATCTATCAAATCTGTATGCGGCGATGGGAAGATGGACTGATGTTGAGAAAGTGAGGGGGGTGATGAAGGATAGGCAACTGACCAAGGACTTGGGGTGTAGTTCTGTGGAGGTACAACACCAGAGGAATGTTGGCGAACTTTTGGCATAG 1395 0.5161 MAGWERAAILVLLKESCRSQKQVREIQAQLILQKIYPNTRVAQHFIGACQSHGLLNTALVLFTTLLPHPHVYTFNTLIRVFSQSLTPHTPLFIYTHMRRYSLLPNNFTFPPLFKSLSDTRQVTQAQCVYTHVLKLGHHQDIYVRNSLLDVYASCGHFALCRQLFDEMLHRDVVSWSVLITGYNSVGGYDDALVVFEQMQYAGFVPNRVTMINALHACAHSGNVDMGAWIHGVIKREGWELDVVLGTALIDMYGKCGRVEEGLNVFRSMKEKNVFTWNTVIKGLALAKSGQEAIWWFNKMEKDGVRPDEVTLLAVLSACSHSGLVDMGREIFGLLVDGRYGCCPNVIHYACMVDVLARSGRLKEAVEFMGCMPFGPTKAMWGSLLVGSKAQGDLELGLLAAGKLIELEPDNTAYYVHLSNLYAAMGRWTDVEKVRGVMKDRQLTKDLGCSSVEVQHQRNVGELLA* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1756 464 SUPERFAMILY TPR-like 157 427 IPR011990 GO:0005515
Gso19g1756 464 Pfam E motif 392 452 IPR046848 -
Gso19g1756 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Gso19g1756 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 271 IPR002885 -
Gso19g1756 464 Gene3D Tetratricopeptide repeat domain 232 331 IPR011990 GO:0005515
Gso19g1756 464 Pfam PPR repeat family 271 319 IPR002885 -
Gso19g1756 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Gso19g1756 464 PANTHER - 9 459 - -
Gso19g1756 464 Gene3D Tetratricopeptide repeat domain 336 459 IPR011990 GO:0005515
Gso19g1756 464 TIGRFAM PPR: pentatricopeptide repeat domain 145 173 IPR002885 -
Gso19g1756 464 TIGRFAM PPR: pentatricopeptide repeat domain 274 308 IPR002885 -
Gso19g1756 464 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
Gso19g1756 464 TIGRFAM PPR: pentatricopeptide repeat domain 246 272 IPR002885 -
Gso19g1756 464 Gene3D Tetratricopeptide repeat domain 89 231 IPR011990 GO:0005515
Gso19g1756 464 Pfam PPR repeat 340 371 IPR002885 -
Gso19g1756 464 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 459 - -
Gso19g1756 464 Pfam PPR repeat 173 203 IPR002885 -
Gso19g1756 464 Pfam PPR repeat 145 171 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1756 Gso-Chr19 46405086 46406749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1756 49 453 Glycoside Hydrolase AT3G49170 31.220 2.03e-61 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1756 - - gmx:102664320 951.044