Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1699 ATGAGCATCACCAGTGGTAGCAACTCAATCCTGAAAACGCTGAGGTTGAAGAATCCCAAGCTTGTACTGTTAGAGTGTTGTTCCAATGCTAGGGACCTCAAAATCATCCATGCCCACATGCTAAGAACCCACCTTTTCTTCGACGTGTTTGCAGCCAGTCGCCTCATTGCTTTCTGCATAGACTCAACCACCAACTTGCTGCATTACGCCATAAGGGTCGCGTCCCAAATCCAAAATCCCAATCTCTTCATCTACAATGCACTCATACGTGGGTGTTCCACAAGTGAAAACCCTGAAAACTCCTTTCACTATTATATCAAAGCTCTACGCTTTGGTCTATTACCTGATAATATCACCCACCCTTTTTTGGTTAAGGCATGTGCCCAGCTTGAGAATGCACCTATGGGCATGCAAACACATGGACAAGCCATTAAGCATGGATTTGAACAAGATTTTTACGTTCAAAACTCTCTTGTTCATATGTATGCCTCTGTTGGGGACATAAATGCTGCGAGGAGTGTTTTTCAGAGGATGTGTCGGTTTGATGTGGTGTCATGGACTTGCATGATTGCGGGGTATCATCGATGTGGGGATGCTAAATCTGCACGTGAACTGTTTGATAGAATGCCGGAGAGGAATTTGGTGACGTGGAGCACGATGATTAGCGGTTATGCCCGGAACAATTGTTTTGAGAAAGCAGTTGAGACGTTTGAGGCTCTTCAGGCAGAAGGGGTGGTTGCTAATGAGACTGTGATGGTGGGAGTGATATCTTCTTGTGCTCATTTGGGGGCTCTTGCAATGGGGGAGAAAGCTCACGAGTATGTGATGAGGAATAAGTTGAGTTTGAATCTGATTCTTGGGACAGCTGTGGTTGATATGTATGCAAGATGTGGGAATGTTGAGAAAGCTGTTATGGTTTTTGAGCAACTGCCAGAAAAAGATGTCCTTTGTTGGACAGCTTTGATTGCTGGATTGGCCATGCATGGTTATGCAGAGAAAGCACTTTGGTATTTTTCAGAAATGGCAAAAAAGGGGTTTGTTCCTAGAGACATTACGTTTACTGCAGTGTTGACAGCTTGCAGCCATGCAGGAATGGTTGAAAGGGGTTTGGAAATATTCGAAAGCATGAAACGTGATCATGGGGTGGAGCCGAGACTGGAGCACTATGGATGTATGGTTGATCTTCTTGGTCGTGCAGGAAAGTTGAGAAAGGCGGAGAAGTTTGTTCTTAAAATGCCTGTGAAGCCAAATGCTCCAATATGGAGAGCATTGCTAGGAGCTTGCAGGATTCACAAGAATGTGGAAGTTGGGGAAAGGGTGGGGAAGATTTTGTTAGAGATGCAACCAGAATATAGTGGTCATTATGTGCTACTCTCCAACATATATGCTCGTGCAAATAAGTGGAAAGATGTTACTGTCATGAGGCAAATGATGAAAGACAAAGGAGTAAGAAAACCACCTGGGTATAGTCTCATTGAGATAGATGGAAAAGTTCATGAATTTACAATTGGAGATAAAACACACCCGGAAATAGAGAAAATAGAAAGAATATGGGAAGATATAATACTCCCAAAAATAAAACTAGCTGGCTATGTTGGAAATACAGCTGAGACAATGTTTGACATTGATGAAGAGGAAAAGGAAGGTGCCCTTCACAGGCATAGTGAGAAGCTGGCCATTGCATATGGAATTATGAAGATTCGGGCTCCTACACCAATTCGGATTGTTAAAAATTTGCGTGTCTGTGAAGATTGTCACACAGCTACCAAGTTGATTTCAAAGGTTTTCGAAGTGGAGTTGATTGTGAGAGATCGAAACCGATTCCATCATTTTAAAGAAGGCACGTGTTCTTGTATGGATTACTGGTGA 1869 0.4307 MSITSGSNSILKTLRLKNPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1699 622 Pfam PPR repeat family 313 361 IPR002885 -
Gso19g1699 622 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 84 596 - -
Gso19g1699 622 Pfam E motif 431 493 IPR046848 -
Gso19g1699 622 Pfam DYW family of nucleic acid deaminases 530 622 IPR032867 GO:0008270
Gso19g1699 622 Pfam PPR repeat 84 112 IPR002885 -
Gso19g1699 622 Pfam PPR repeat 215 245 IPR002885 -
Gso19g1699 622 Pfam PPR repeat 156 182 IPR002885 -
Gso19g1699 622 Pfam PPR repeat 388 413 IPR002885 -
Gso19g1699 622 Pfam PPR repeat 184 213 IPR002885 -
Gso19g1699 622 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 84 596 - -
Gso19g1699 622 Gene3D Tetratricopeptide repeat domain 21 179 IPR011990 GO:0005515
Gso19g1699 622 Gene3D Tetratricopeptide repeat domain 288 505 IPR011990 GO:0005515
Gso19g1699 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 384 IPR002885 -
Gso19g1699 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Gso19g1699 622 SUPERFAMILY TPR-like 136 238 IPR011990 GO:0005515
Gso19g1699 622 TIGRFAM PPR: pentatricopeptide repeat domain 184 214 IPR002885 -
Gso19g1699 622 TIGRFAM PPR: pentatricopeptide repeat domain 351 384 IPR002885 -
Gso19g1699 622 TIGRFAM PPR: pentatricopeptide repeat domain 288 315 IPR002885 -
Gso19g1699 622 TIGRFAM PPR: pentatricopeptide repeat domain 317 348 IPR002885 -
Gso19g1699 622 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Gso19g1699 622 TIGRFAM PPR: pentatricopeptide repeat domain 154 184 IPR002885 -
Gso19g1699 622 Gene3D Tetratricopeptide repeat domain 180 283 IPR011990 GO:0005515
Gso19g1699 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Gso19g1699 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1699 Gso-Chr19 45923816 45925937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1699 23 622 Glycoside Hydrolase AT3G49170 33.675 9.43e-127 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1699 - - gmx:100797063 1267.29