Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1687 ATGACCCGTTTATCCGAGAGACTGGTCCGTTTGCGTGGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCTATCTCCTTCATCTCTGCAAGTTCCTCGCTCGCTTCCTACTCTCCCAAATACTACCCGCCATGGACAACCTCTTCTCTGATTACTTCTCCGACGACTTCGATTCCTCCCCCTACCGTCCCCACCGCCGCTTCCTCCAAGACCAAGACCACCACCGCGACCGCGATTTCGCCGCCCTCGAGCGCCTCTACCTCCTCCCCTACACCTGGTGGCTGGAAGCGGAAAACGAAGGTGATCGAGGAGACGCAGTGCTTTATACGGTGTCATGCAATTCCGATTCCGACTCCGAGATTTTGCTTCATCTCAGGAAGGAAGAGGAACCACACAACAACATTGGGGTTTCTGCCCGTCAGTATGCCTTGGTTCCCGAGGGACTTTGGTTGCGTGCTCTCAAGAGGTATAATGATTTTAATAATGCAGTGAAAGATTTTGGAAGCATCCCATATGAAGAGGAAAGTTTGCCAGATTTGTTCCCTTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAGATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGATAAAGCTTGTGACATTTTCAATTCTACATATAACCCTGTGCACATTTGGGACTTTTCAGGACAGACAACCCAGTTCTTCTTGAATGACAAATCTAGATTGCCAAACGATTCTCCTGGTCAACTTGGAAAAGAGGTAGTTCTGGAGTTACAAGTTCATGGACTTCCAGATTCTGTAGGGGGTAATGGGGGCAATGAAATGATTTTAGATAGGTCTCAGACGGAATGTTCACATAGTGGCTCTGTTATAATGAATGGAAGCACCGACAATGTGATCCCCTGCATATCAGCGACCAACCATTTTCGAGGCAGTAGCTGTAGAGCAATTCAATCTTTGGGCTTAACAGGATTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTAGCTCATACCCCAAAACTTGTTGATTTTTTCCTTGGAGATTACTGTAAAGAGATAAATTATGAAAATCCGTTGGGAATGAATGGAGAACTTGCTCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTGGAGCAGCGCCCATTGCACCAAGAACGTTCAAGATGAAACTAGCTAATTTTGCTCCTCAATTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAACCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGTCAATTTCGGTCGACATTGGTTTGCCCTATTTGCAAGAAGGTTTCAATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACTACGATACGGACCATGACTTTGACGGTCATAAGCACTGATGGGATAACATCGCCTTCCACAATTACGGTAACAGTGCCTGAAAGTGGAACACTTAAGGATCTTATTGGGGCATTAAGTACTTCTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAGGAATAAAATTTTTCGAGTATTCGAGGATCCATCTGATTTGTTAGTTGAAATTAGAGATCAGGACAAACTTGTCGCTTACCGAATGCAGAAGTGTAATGAGCCTAGTCCCTTGGTTGTTTTTTTGCATGAACGTTTGGCGGAAAATTTTGGGAAGGAGAGGTTTGAAAACAGGTTGTTTGGTATTCCGCTTGTTACAAGGTGGTCCAGTATTTCCTGTGGATATGATGATGTTCAAAAGGAGTTTCTGAAGTTAATCAATCCATTTCTGATGCGCACTGAAGATGTATTACATGAGTATGATAAGAATGATGGTGTTAATAAAAGAGTAAGTGAAGATGATGAATTGGGTGATGCTACTAACTCTGCAGCAATAGGAAATGATGCAGACTCAAACAGTGGAACAGAGGATGGCATTCATTCTTCAACTGCCTTTGAATTCTACTTACAAGGAATAGAGAGGGCGAAGATAATAGTGAAAAAACCATTACCACAAGTCACAACATTGCCTGGAAAGCTGCCTGTGGTAGTTGTCTTGTGGTCGGATAAGATGCTTAAAATGTATGATACATACCTGCTTGACTCATTGCCTGAGGTTTTCAAGCCCCAGCTATTTGCCAAGAGAATGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTCACTGCAAAGAACCTCAGCAAGCATATAAGAAACTAGATCTTTGGAGATTGCCTGAAATTCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGCTACTTCAAGAACAAGCTGGAAACATTTGTTGATTTCCCAATTAATGATCTGGACTTATCAACATATGTAGCCCACGGGAATAGCCAGTCTTCCAACCGCTATGTGTTATATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGGCTATGATAAATGGTATGATTTTGATGACAGCAGGGTCGAATCTGTTAGTGAGGACATGATAAAGACTCCTGCTGCCTATGTTCTTTTCTACAGGAAAATTTAG 2781 0.4275 MTRLSERLVRLRGLFPKPTRFLALVSLSYLLHLCKFLARFLLSQILPAMDNLFSDYFSDDFDSSPYRPHRRFLQDQDHHRDRDFAALERLYLLPYTWWLEAENEGDRGDAVLYTVSCNSDSDSEILLHLRKEEEPHNNIGVSARQYALVPEGLWLRALKRYNDFNNAVKDFGSIPYEEESLPDLFPLQVKIFVSWETSSLVAKISQKENVADFYDKACDIFNSTYNPVHIWDFSGQTTQFFLNDKSRLPNDSPGQLGKEVVLELQVHGLPDSVGGNGGNEMILDRSQTECSHSGSVIMNGSTDNVIPCISATNHFRGSSCRAIQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYCKEINYENPLGMNGELALAFGDLLRKLWVPGAAPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITSPSTITVTVPESGTLKDLIGALSTSCSLRDDETLLVAEIYRNKIFRVFEDPSDLLVEIRDQDKLVAYRMQKCNEPSPLVVFLHERLAENFGKERFENRLFGIPLVTRWSSISCGYDDVQKEFLKLINPFLMRTEDVLHEYDKNDGVNKRVSEDDELGDATNSAAIGNDADSNSGTEDGIHSSTAFEFYLQGIERAKIIVKKPLPQVTTLPGKLPVVVVLWSDKMLKMYDTYLLDSLPEVFKPQLFAKRMQESVSIYKCLEAFLKEEPLGPEDMWYCPHCKEPQQAYKKLDLWRLPEILVVHLKRFSYSRYFKNKLETFVDFPINDLDLSTYVAHGNSQSSNRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESVSEDMIKTPAAYVLFYRKI* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1687 926 Gene3D Cysteine proteinases 618 926 - -
Gso19g1687 926 Gene3D Cysteine proteinases 317 559 - -
Gso19g1687 926 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 48 926 - -
Gso19g1687 926 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 48 926 - -
Gso19g1687 926 CDD Peptidase_C19R 753 924 - -
Gso19g1687 926 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 869 886 IPR018200 GO:0004843|GO:0006511
Gso19g1687 926 MobiDBLite consensus disorder prediction 674 702 - -
Gso19g1687 926 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 330 345 IPR018200 GO:0004843|GO:0006511
Gso19g1687 926 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 329 926 IPR028889 -
Gso19g1687 926 SUPERFAMILY Cysteine proteinases 327 925 IPR038765 -
Gso19g1687 926 Pfam Ubiquitin carboxyl-terminal hydrolase 329 923 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1687 Gso-Chr19 45807721 45815503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1687 770 926 Miscellaneous Gene Families AT4G31670 34.375 2.64e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1687 - K21343 gmx:100791802 1858.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1687 19 45807721 45815503 Gso3g1719 3 43051187 43058162 GST