Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1639 ATGCTCTGCTATTCTTATTCATTCACTCTGCTCCCTCACTCCAACTTTCAAAACCCTAATTTCTTCCTCGAAATCTTCTCCTCCCTTCCCCGATTTCATTTCCACTGCTTTTTCCTTCGCTTGGTCGCTTCAATTGCGAATTCCGTCACATTCTTTGTGCAGATGGCAGGGGCGGATAATGGTGACGGCAACGGGAGTGAAAGGGAATTAGCGGGAAATAGCGATAACGGTTCTGTGGAAGTTGCAGAGGCTTCTGTTAGTGATAGTGGTTGTGAAGGGAACGACAGCGTTTCTTACGCGAACGTCTTGCGTTCGAGGAACAAGTTTGTTGATGCTCTTGCTATCTACGAGCGCGTGTTGGAGAGTGATGGTGCAAATGTAGAGGCGCTCATTGGAAAAGGAATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCGTACGAGAGTTTTTCTGAGGCTATCAAGGTGGATCCTCAAAATGCTTGTGCTCTAACGCATTGCGGCATTCTGCATAAGGACGAGGGTCGCCTTGTGGAGGCTGCTGAGTCATATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTGCTGAATGCCTTGCCATTGTTTTAACAGATATTGGTACCAACATAAAGCTGGCAGGGAACACTCAGGATGGAATTCAAAAATATTTTGAGGCCCTCAAAGTAGATCCGCACTATGCTCCTGCATACTATAATCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACACAGCCCTCAGTTTCTATGAAAAGGCTGCATCAGAGAGGCCAGTCTATGCCGAGGCTTATTGCAATATGGGTGTGATTTTTAAAAATCGCGGTGATTTGGAATCGGCTATTACTTGTTATGAGAGGTGTTTAACTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCATTAACAGATTTGGGAACAAAGGTTAAATTGGAGGGGGACATCAACCAAGGTGTGACTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTACGCTGATGCTATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTTGCCTTTCACTTCAATCCCCATTGTGCGGAAGCTTGTAACAATCTCGGAGTTATATATAAAGATCGTGAAAACCTTGATAAAGCTGTAGAGTGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCGTTAAATAACCTCGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATTATTGCAAATCCAACATATGCAGAGGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGTGATATAGCTCGAGCAATTAATGCTTATGAGCAATGTCTTAAGATTGATCCTGATTCTCGAAATGCTGGCCAGAATCGCTTGCTTGCAATGAATTACATAGAGGAAGGACATGATGACACACTTTTTGAGGTTCACAGGGACTGGGGTAGGCGATTCATGAGACTATATTCACAGTACACATCATGGGACAACTCAAAAGATCCTGAACGGCCCCTAGTGATAGGCTATGTATCTCCTGATTATTTTACTCATTCTGTGTCATATTTCATAGAAGCGCCTCTTGTCTATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATTCAAAAACCATTAGATTTAGAGAGAAAGTTGTAAATAAGGGTGGTATCTGGAAAGATATTTATGGAATTGATGAAAAGATGGTTGCCAACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACTGGACATACTGCAAACAATAAATTGGGAATGATGGCATGCCGACCTGCACCAATTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCACTGGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTAGGTTGCCAGAATGCTTCCTTTGTTACACCCCTTCCCTGGAGGCTGGTCCTGTTTGTCCAACTCCTGCTCTTTCCAATGGTTTTGTCACATTTGGTAGTTTCAACAATCTTGCCAAGATTACACCCAAGGTATTGCAGGTTTGGGTGAGGATACTGTGTGCAATTCCGAATTCCCGCCTTGTGGTAAAATGTAAACCTTTTTGCAGTGACAGTGTGCGACAGATATTCCTTTCAACACTAGAGCAGTTAGGTTTAGAACCACTACGTGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCCTATTCTCTGATGGACATCAGTTTGGATACATTTCCATATGCTGGAACAACAACAACATGTGAATCTTTATATATGGGAGTTCCATGTGTCACTATGGCTGGATCAGTACATGCGCACAATGTTGGTGTTAGTCTTCTTAGCAAAGTTGGACTGGAGCATTTGATTGCCAGAAATGAAGATGAATATGTTGAATTGGCTCAGCAGTTGGCCTCTGACATTTCCGCACTACAAAATTTGAGAATGAGTCTGCGAAATCTCATGTCCAAGTCCCCTCTCTGTGATGGTGCCAAATTTATCCTAGGTCTAGAGTCAACATACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTTCCATCTTTGAAACGCATGGAATTGTTGCAAGTTGCTACCGGTGACCTGTCAAATAAGAATTCTGAGCCAACAAGGATTGCAAACTCAAGGGAGGACAGTCCTGGATCTGTCAAGGCCAATGGATTTAAAACAAGGCCCGTGTCAAAGCTTAACATACACAGTTGCGAAGAAAACGACGGGTCATCAAATCACAGTAGTAAACAAGGAAAGACGAGTTAA 2916 0.4211 MLCYSYSFTLLPHSNFQNPNFFLEIFSSLPRFHFHCFFLRLVASIANSVTFFVQMAGADNGDGNGSERELAGNSDNGSVEVAEASVSDSGCEGNDSVSYANVLRSRNKFVDALAIYERVLESDGANVEALIGKGICLQMQNKGRLAYESFSEAIKVDPQNACALTHCGILHKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVDPHYAPAYYNLGVVYSEMMQYDTALSFYEKAASERPVYAEAYCNMGVIFKNRGDLESAITCYERCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTLYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYSQYTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVVNKGGIWKDIYGIDEKMVANMVREDQVDILVELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSLEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWVRILCAIPNSRLVVKCKPFCSDSVRQIFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRNMWHRYCRGDVPSLKRMELLQVATGDLSNKNSEPTRIANSREDSPGSVKANGFKTRPVSKLNIHSCEENDGSSNHSSKQGKTS* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1639 971 SUPERFAMILY TPR-like 265 483 IPR011990 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat region circular profile. 270 302 - -
Gso19g1639 971 MobiDBLite consensus disorder prediction 953 971 - -
Gso19g1639 971 ProSiteProfiles TPR repeat profile. 161 194 IPR019734 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat profile. 447 480 IPR019734 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat profile. 270 303 IPR019734 GO:0005515
Gso19g1639 971 Pfam Tetratricopeptide repeat 415 440 - -
Gso19g1639 971 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Gso19g1639 971 MobiDBLite consensus disorder prediction 913 971 - -
Gso19g1639 971 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 85 906 - -
Gso19g1639 971 SUPERFAMILY TPR-like 98 319 IPR011990 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat profile. 127 160 IPR019734 GO:0005515
Gso19g1639 971 SUPERFAMILY TPR-like 391 847 IPR011990 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat region circular profile. 379 411 - -
Gso19g1639 971 Pfam Glycosyl transferase family 41 524 683 IPR029489 -
Gso19g1639 971 Pfam Glycosyl transferase family 41 700 879 IPR029489 -
Gso19g1639 971 Gene3D Tetratricopeptide repeat domain 315 380 IPR011990 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Gso19g1639 971 SMART sel1 345 376 IPR006597 -
Gso19g1639 971 SMART sel1 379 410 IPR006597 -
Gso19g1639 971 SMART sel1 236 267 IPR006597 -
Gso19g1639 971 SMART sel1 447 478 IPR006597 -
Gso19g1639 971 Gene3D Tetratricopeptide repeat domain 94 202 IPR011990 GO:0005515
Gso19g1639 971 Gene3D Tetratricopeptide repeat domain 203 314 IPR011990 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat profile. 236 269 IPR019734 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat region circular profile. 447 479 - -
Gso19g1639 971 Gene3D Tetratricopeptide repeat domain 381 417 IPR011990 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 202 235 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 236 269 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 93 126 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 413 446 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 161 194 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 379 412 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 270 303 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 447 480 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 345 378 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 127 160 IPR019734 GO:0005515
Gso19g1639 971 SMART tpr_5 311 344 IPR019734 GO:0005515
Gso19g1639 971 Pfam Tetratricopeptide repeat 379 412 IPR001440 GO:0005515
Gso19g1639 971 Pfam Tetratricopeptide repeat 447 479 IPR001440 GO:0005515
Gso19g1639 971 Pfam Tetratricopeptide repeat 270 303 IPR001440 GO:0005515
Gso19g1639 971 Pfam Tetratricopeptide repeat 236 264 IPR001440 GO:0005515
Gso19g1639 971 ProSiteProfiles TPR repeat region circular profile. 236 267 - -
Gso19g1639 971 Gene3D Tetratricopeptide repeat domain 418 504 IPR011990 GO:0005515
Gso19g1639 971 Gene3D - 518 688 - -
Gso19g1639 971 MobiDBLite consensus disorder prediction 913 934 - -
Gso19g1639 971 Gene3D Glycogen Phosphorylase B; 689 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1639 Gso-Chr19 45302363 45317293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1639 251 947 Glycosyltransferase AT3G11540 63.623 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1639 K09667 - gmx:100779014 1830.84