Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1477 ATGAGAGATTTCGTGATCCTTGGCTCCTCCGTTGTAACTCCCTTTTCTTCTTCTTCAACACCGCATCATCAACATCGTCACCCCATCAAACCACCCCACAAGCCTTCTCTCCCAAAGCTCGCTCCTTTTTCTTCCAATTGGAACATTTCCTGCGCCCTCCAAGCCCCACTCGCTCTCAGCCACTGCGCTGATTCAAAGCTCGTTCAGGAATTTGAAGTGGTTTTTGAGGACTTTATTGATTCTGGGGTGGTCGATGCTGAGCTTCTGGCCAAGGTGGTTCTGTTGGGAATTCGAGGGAAGAAGGTTCGGAGTGTGATTCACGCCCTCAACAAAGTTCAGGGTCGAAGAATTTCTTTGTCTACTCATCTTAATGGCTCTGATATCATTGCAAAGGAGTGTTGCCGCTTGGTCACGTGCAGCCACGTTGAGGAGGCTGTTGAACTCATGGAGGTTCTCGCACGTTTCCAGATATCAATCAGGGAACTTGTTCAGCCGTCTGACATAATTAAACGATGTGTTCTTAGTCGGAACCCAATTTTAGCTGTGAGGTATGCATGTCTTCTTCCCCATGCACATATATTGTTCTGCAATATTATTTCAGAATTTGGCAAAAGGAGGGATTTAGTTTCTGCTTTGAAAGCGTATGAGGCGTCGAAGAAACACTTGAATACTCCCAATATGTACATATATCGGGCAACAATTGACACTTGTGGTTTATGTCGTGATTACATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAAATATGCAGAATCTCGGTTTAAAACCAGATATGACATCTTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAGAGTTGATCTGGCTCAAGACATTTATAGGGAACTTAAGCATTTGGAATCAGTGGGACAGCTAAAATTAGATGTCTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGTAAAGTTGTGGCAGATGGCTCTAAAAATCAAGCAAGACATGCTGTCTGCTGGTGTTTCTCTTAATATTGTTGCATGGTCATCATTAATCAATGCCTGCGCACATGCAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCAGGCTGTGAACCTAATACGCAGTGTTTTAACATCATTCTAAATGCATGTGTTGAAGCTTACCAATATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAAAAAGATGTTGGGGTCATCTGGTGAAGGCTACAATAGCAATATAGGGCAGGGACACATGCATGATGTTACTTCTATTCCAAATGGCATTTCTAATTCACACATCTTGAATTTTGCTGAGAGGTTCCCTTTCACACCAACTACAACAACATACAATATCTTGCTGAAGGCCTGTGGTACTGATTATTACCATGCAAAAGCATTAATCAAAGAGATGGAAACAGTAGGTCTTTCCCCTAATCAGATAAGCTGGTCAATTTTGATAGATATATGTGGAGCATCATCAAATGTGGAGGGTGCCATTGAGATTTTGAAAACCATGGGTGATGCTGGAATTAAACCTGATGTTATTGCATATACAACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTATGCAAGCATTAACATTATATGAAGAAATGAAATGCTACCAGATACGTCCAAATTGGGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGGTACAAACCCAATGACTACTATCTAGAAGAACTGATTGAGGAGTGGTGTGAAGGAGTAATACAAAATAACAGAGAGAAGCAAGGAGAATTTTCTTCCAGCAATAAATCTGAATCAGAGAGACCCCAAAGTTTACTTCTTGAAAAAATTGCAGCTCACCTTCTAAAGAGGGTGGCTGATATCCTAGCTATTGATGTTCAAGGGCTCACAAAGGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGAATGATCAAAGAGAATTACGGTTTAGGACATTCTGTAAATGATGATATCTTGATCATCATAGGAGCTACTAAAGTAGACGAAAATCCATCCAAACACATATTAGAAGTGCAAGAGGCAATAATAAAACTTCTTAGGAATGAGTTGGGGCTTGAAGTTTTTCCAGCCAAAACCAGATTAGCACTAAGTGACACAGCAAATTTAGAGTACCCCAACTTTTCTAATCTGAGCATAGAAGCACAACCTGGAGAGAATGCATTGGGGTTTCAGACAAGGAGGCCTGGAGTTCTAGTAAGGTTGAAGGTCACCAAAAAATCATTATACCGTTGGTTGCACAGGAAGTAA 2436 0.4072 MRDFVILGSSVVTPFSSSSTPHHQHRHPIKPPHKPSLPKLAPFSSNWNISCALQAPLALSHCADSKLVQEFEVVFEDFIDSGVVDAELLAKVVLLGIRGKKVRSVIHALNKVQGRRISLSTHLNGSDIIAKECCRLVTCSHVEEAVELMEVLARFQISIRELVQPSDIIKRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSALKAYEASKKHLNTPNMYIYRATIDTCGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNVNSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLKLDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYNSNIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMETVGLSPNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFMQALTLYEEMKCYQIRPNWVTYNTLLKARSKYGFLHEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVIQNNREKQGEFSSSNKSESERPQSLLLEKIAAHLLKRVADILAIDVQGLTKVEARLVVLAVLRMIKENYGLGHSVNDDILIIIGATKVDENPSKHILEVQEAIIKLLRNELGLEVFPAKTRLALSDTANLEYPNFSNLSIEAQPGENALGFQTRRPGVLVRLKVTKKSLYRWLHRK* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1477 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 619 IPR002885 -
Gso19g1477 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 324 IPR002885 -
Gso19g1477 811 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 50 801 - -
Gso19g1477 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Gso19g1477 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Gso19g1477 811 TIGRFAM PPR: pentatricopeptide repeat domain 370 404 IPR002885 -
Gso19g1477 811 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Gso19g1477 811 TIGRFAM PPR: pentatricopeptide repeat domain 297 322 IPR002885 -
Gso19g1477 811 TIGRFAM PPR: pentatricopeptide repeat domain 514 548 IPR002885 -
Gso19g1477 811 TIGRFAM PPR: pentatricopeptide repeat domain 550 583 IPR002885 -
Gso19g1477 811 Pfam Pentatricopeptide repeat domain 225 271 IPR002885 -
Gso19g1477 811 Pfam Pentatricopeptide repeat domain 282 344 IPR002885 -
Gso19g1477 811 Pfam Pentatricopeptide repeat domain 535 592 IPR002885 -
Gso19g1477 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Gso19g1477 811 Gene3D Tetratricopeptide repeat domain 193 324 IPR011990 GO:0005515
Gso19g1477 811 Gene3D Tetratricopeptide repeat domain 325 455 IPR011990 GO:0005515
Gso19g1477 811 Gene3D Tetratricopeptide repeat domain 465 666 IPR011990 GO:0005515
Gso19g1477 811 MobiDBLite consensus disorder prediction 14 35 - -
Gso19g1477 811 Pfam PPR repeat family 368 415 IPR002885 -
Gso19g1477 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Gso19g1477 811 PANTHER OS03G0284900 PROTEIN 50 801 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1477 189 639 Glycosyltransferase AT1G05670 21.598 4.04e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1477 - - gmx:100794606 1598.18