Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1417 ATGGAGAATCCCTGTGAGGTGCTCGGTTCCAAAGGGTTAATTAGAAGGCATGAATTTGTGAGGATCATAATCCAGTGTCTATATTCATTAGGGTACAGTAGCTCTGCATCGTGTTTGGAATCGGAATCTGGTATTTCGTACAAGTCCAATGAGGTTAAGTTGCTTGAATCACTTATTTTGAACGGGAGTTGGGACGAAAGCATTGATTATCTCAATTCCATAAAGGATGAGTTGGGTGAAACCAGGGAATCTGCCCTGTTTCTTGTGTTCAGACAGTGTGTTATGGAGTATTTGAATTGCGGCGAGTATGCCTTAGCTTTAGGGGTGTTAAGGAAACAAGTTTCTGCCTTGGATGCGGGCAAGTGCAAAGTTCACAGCTTCGCTAAGTGCTTGCTTTCGTTTAAGGATAGGGAGTTAGGTGCAGTTGATGGTGGCGATGTTGTTGTGCATGATTTGCGAAAGAAGTTATTAGCAGATTTGGAGAAGTTGTTTCCTCCTCCGATTTCGGTGCCTGAAGGAAGGCTGGAGCATTTGGTAGAAAATACTGTTATGTCTTGGGTTGATTCGTGTATGTATCATAGTTCGTCGAGTCCAATTTCACTTTATGAGGATCATCATTGCAGCAGGGATCAGATTCCTACTACAACGACTCAGATATTGACTGGACATAAAAATGAAGTTTGGTTTGTTCAATTTTCTAATAATGGAGAGTACCTGGCCTCTTCATCCAATGATTGCACCGCCATCATATGGAAGGTGCTGGAGGATGGGAAATTGACATTGAAGCACACACTTTATGGTCACCAACATGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTGCTTACATGTGGGAACACAGAAGTTTTGAAGCTGTGGGATGTTGAAACAGGTACATGCAAGCACACATTTGGGAATCAAGGCTTTGTTGTCAGCTCTTGTGCCTGGTTTCCCAACTCAAAACAGTTCGTGTGTGGCAGTTCTGACCCTGAAAAGGGCGTTTGCATGTGGGATTGTGATGGAAATGTGATAAAATCATGGAGAGGAATGAGGATGCCCAAGGTCGTAGATCTTGCTGTTACTCCAGATGGTGAGTATCTTATCAGCATATTCATGGATAAAGAAATTCGGATTCTGCACATGGGAACCTATGCTGAGCGAGTCATTTCAGAGGAGCACCCAATCACATCCCTTTCAGTTTCAGGAGATAGCAAGTTCTTCATTGTCAATCTAAACAGCCAGGAGATTCATATGTGGGATGTGGCTGGGAAATGGGATAAGCCATTGAGGTTTATGGGCCACAAGCAACACAAATATGTGATAAGGTCATGCTTTGGTGGATTGAATAACACGTTTATCGCCAGTGGTAGTGAGAATTCACAGGTATACATTTGGAACTGCCGGAACTCCAGGCCTGTAGAGGTTCTATCTGGGCACTCCATGACTGTGAACTGTGTGAGTTGGAACCCCAAAATACCACAAATGTTGGCATCTGCAAGTGATGATTATACCATTCGTATATGGGGACCCAGCTTACAAAAAAAAGAAGGCCAACTTGAGTAG 1572 0.4338 MENPCEVLGSKGLIRRHEFVRIIIQCLYSLGYSSSASCLESESGISYKSNEVKLLESLILNGSWDESIDYLNSIKDELGETRESALFLVFRQCVMEYLNCGEYALALGVLRKQVSALDAGKCKVHSFAKCLLSFKDRELGAVDGGDVVVHDLRKKLLADLEKLFPPPISVPEGRLEHLVENTVMSWVDSCMYHSSSSPISLYEDHHCSRDQIPTTTTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGKLTLKHTLYGHQHAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPNSKQFVCGSSDPEKGVCMWDCDGNVIKSWRGMRMPKVVDLAVTPDGEYLISIFMDKEIRILHMGTYAERVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVAGKWDKPLRFMGHKQHKYVIRSCFGGLNNTFIASGSENSQVYIWNCRNSRPVEVLSGHSMTVNCVSWNPKIPQMLASASDDYTIRIWGPSLQKKEGQLE* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1417 523 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Gso19g1417 523 SUPERFAMILY WD40 repeat-like 210 511 IPR036322 GO:0005515
Gso19g1417 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Gso19g1417 523 SMART ctlh 48 105 IPR006595 -
Gso19g1417 523 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Gso19g1417 523 Pfam WD domain, G-beta repeat 217 252 IPR001680 GO:0005515
Gso19g1417 523 Pfam WD domain, G-beta repeat 261 297 IPR001680 GO:0005515
Gso19g1417 523 Pfam WD domain, G-beta repeat 436 469 IPR001680 GO:0005515
Gso19g1417 523 Pfam WD domain, G-beta repeat 301 340 IPR001680 GO:0005515
Gso19g1417 523 Pfam WD domain, G-beta repeat 475 511 IPR001680 GO:0005515
Gso19g1417 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 253 IPR001680 GO:0005515
Gso19g1417 523 SMART Lish 15 47 IPR006594 GO:0005515
Gso19g1417 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Gso19g1417 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 511 IPR001680 GO:0005515
Gso19g1417 523 SMART WD40_4 385 423 IPR001680 GO:0005515
Gso19g1417 523 SMART WD40_4 300 341 IPR001680 GO:0005515
Gso19g1417 523 SMART WD40_4 258 297 IPR001680 GO:0005515
Gso19g1417 523 SMART WD40_4 427 469 IPR001680 GO:0005515
Gso19g1417 523 SMART WD40_4 213 252 IPR001680 GO:0005515
Gso19g1417 523 SMART WD40_4 472 512 IPR001680 GO:0005515
Gso19g1417 523 SMART WD40_4 343 383 IPR001680 GO:0005515
Gso19g1417 523 Gene3D - 205 514 IPR015943 GO:0005515
Gso19g1417 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 301 - -
Gso19g1417 523 CDD WD40 217 511 - -
Gso19g1417 523 PANTHER WD REPEAT PROTEIN 26-RELATED 6 514 - -
Gso19g1417 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1417 Gso-Chr19 43025637 43029488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1417 218 371 Miscellaneous Gene Families AT5G08390 29.221 1.47e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1417 K22382 - gmx:100818922 1055.43