Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1416 ATGACAGGGTTTCCTGGCCCTCGCCGCGATCACGCTTCTTCTTCCTCCTCCTCGCACAATTCCAACAGCAGTGGTAGCAACGTATTTAATTTGCTTGCAAGGAGGGAGATCTCACCCCGAACAAGATATGTGGCAAAATGGCATTGGGGAGAACCCGGTGAAGCTTCAAAATCAAAGTCTATTCCTTATTCTCGTCCTAAAAAAGAAGTTGTGAGAGATGCAAGACGTGGTCTCCTCTCATGGGTTGAGGCTGAGTCATTGCGGCATTTGTCTGCTAAGTATTGTCCTTTGGTGCCTCCTCCAAGGTCTACTATTGCAGCAGCATTTAGCCCAGATGGGAAAGTTCTTGCCTCCACACATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTGGTTAGGTTCCATCCATTGCACCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTATCGTCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGTTGTACATATGGCACCACAACAAGAAAGGTGAAGCATCCTCTCCAATATTTGTGTTGAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCATGCCGCACCATATCTTTTAACTGCAGAGGTCAATGATCTTGATTCTTCAGATTCCTCAATGACAGAGGCTACATCTCTTGGTTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCATCCTACAGAACATATTAATTTGTCCAGCGAACTACCTTATGTGTCATTACCTTTCTATGTAATGCCTGCATATAATGTTGATGAGTCAAGAGCAGAACTACAGCATGCTAGTCATGATGTTGTCTCAGGTAGCATGCAAATTGAGTCTTCTGCCATGGTACAGTTGCAAGCAGACCCAAGTGCAGCAGAGCATTATGAGACTACAGTGTCTCCCATGGATACATTCTCTGAGATGCCCTCTAGCTCTCAAACTGGTGCAGAATATCCTGCTCATACTGCTTTCTCTAATGGAATGGGAATTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACCGATGAAACCAGACCTGCTGAAGGAAACCAACATGGGAACTTGACTAATACCTATTCTCTTAATGGCATGCTACATGGACTGTCTAGGCAAACTGCAAACCGTGGGGTTCCCTCAGAGTTTGGTCAATTTCATCAGTTTTTTCCTTCAAGAGATCCAAGTGGATGGGAGATTCCTTTTCTCCATGGATGGATAATGGGTCAAAGCCAAGTTGGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGTCGTGACAATCTATCCCAACAGATTGGTTCTTCTTCTTACATAATGGCATCTAATCATTCCACTTCTAATGTTGATGCAGCGATGCCATCTTCAGCAATACCTGGCAGCATCAGCATACCGGGTTCTTCAATGAGATCAGGTTTACGGAATCACTTTTCACAATCCCGTGTACCTGTATCTGAATCTGGCAATCTTGCTGCTTCTATTAATACCCCACATGATGGATTTGATATGCAAACCATCGTAAGTCGAATTCAGTCAGAACTTGCCACATCAGTGGCTGCAACAGCTGCAGAGTTGCCTTGCACTGTGAAGTTAAGAGTGTGGTCACATGACATAAAAAATCCCTGTGCCCCACTTAATGCTGATAGATGTCGTCTAACCGTACCGCATGCTGTCCTCTGCAGTGAAATGGGTGCTCATTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCCCATATAGAAGCAGATCCAGGATTACAAACTCCAGTACACCAAGATCCTGGTGTTGCAACATCACCAACCCGGCATCCAATTTCAGCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTGTTAGAGGTATACAGAGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTGCCGGAGGAGGACTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGGTCCTCCAGTATGACGGTGCTCATGCAGTGAATGGCGCTGGACCAAGTTACTTTCCTGAGGAGACCATCGTTGGAGTCAGTCAGTGA 2427 0.4466 MTGFPGPRRDHASSSSSSHNSNSSGSNVFNLLARREISPRTRYVAKWHWGEPGEASKSKSIPYSRPKKEVVRDARRGLLSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPTEHINLSSELPYVSLPFYVMPAYNVDESRAELQHASHDVVSGSMQIESSAMVQLQADPSAAEHYETTVSPMDTFSEMPSSSQTGAEYPAHTAFSNGMGIGLSNLTMDGMETDETRPAEGNQHGNLTNTYSLNGMLHGLSRQTANRGVPSEFGQFHQFFPSRDPSGWEIPFLHGWIMGQSQVGVPSMLPHMGASRDNLSQQIGSSSYIMASNHSTSNVDAAMPSSAIPGSISIPGSSMRSGLRNHFSQSRVPVSESGNLAASINTPHDGFDMQTIVSRIQSELATSVAATAAELPCTVKLRVWSHDIKNPCAPLNADRCRLTVPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQDPGVATSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGAGPSYFPEETIVGVSQ* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1416 808 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 807 - -
Gso19g1416 808 Gene3D - 72 261 IPR015943 GO:0005515
Gso19g1416 808 MobiDBLite consensus disorder prediction 9 28 - -
Gso19g1416 808 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 807 - -
Gso19g1416 808 ProSitePatterns Trp-Asp (WD) repeats signature. 159 173 IPR019775 -
Gso19g1416 808 SMART WD40_4 90 129 IPR001680 GO:0005515
Gso19g1416 808 SMART WD40_4 743 783 IPR001680 GO:0005515
Gso19g1416 808 SMART WD40_4 132 172 IPR001680 GO:0005515
Gso19g1416 808 SMART WD40_4 175 212 IPR001680 GO:0005515
Gso19g1416 808 SUPERFAMILY WD40 repeat-like 106 248 IPR036322 GO:0005515
Gso19g1416 808 Pfam WD domain, G-beta repeat 106 129 IPR001680 GO:0005515
Gso19g1416 808 Pfam WD domain, G-beta repeat 133 172 IPR001680 GO:0005515
Gso19g1416 808 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 139 177 - -
Gso19g1416 808 MobiDBLite consensus disorder prediction 1 28 - -
Gso19g1416 808 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 181 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1416 Gso-Chr19 43011351 43019032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1416 109 212 Miscellaneous Gene Families AT5G08390 29.907 2.37e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1416 - K17985 gmx:100817857 1610.12