Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1408 ATGAAATGTAGCGGTAGAGGTAGTAGAAGTTTGTGTAAAGAAAGAAGAATGGAGGAGGAAGGTGACATATACGACGGTGTTCGAGCTCAGTTCCCTCTCTCATTCGGGAAGCAATCGAAGCCTCAAACCCCTCTTGAAGCCATCCACAATGCGACACGTCGTTCCAATTCCAATCCCAAAACAGCCAACGACCTTCCTTCTGTCTCCTCCTCTTCCAGGGATTGGCTCAATTCCCTCCGCCCTCCCAAAACCCCTACTCCTCCTCCTCCGCTGCCGCCGCCAGATCACGACGACGGCCCAATGGTGGGACCGCCGCCGCCTCCGCCCACAGCTGCCGACGAAGAAGAAGACGACGACGACGCCGAGATGATTGGCCCGCCCCCGCCTCCGCCGATCGCGTCGGAGTCCGAAGACGATTCGGATCAAGATGAGGTAGGAACCCGCTTCCGGATTCCCCTCAGCAACGAGATTGTACTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGACCACACGGGATCAAGAGTGCTTTCTGGAAGCTATGACTATATGGTACGAATGTATGATTTTCAAGGAATGAATGCTCGTTTGGAATCGTTTCGACAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCAGATCGCTTTTTGTGTGTGACTGGATCAGCTCAAGCAAAGATTTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAAGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAGGATGGCTCACTGCGCATATGGGATGTCAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCATGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCAATTCAGATTTGGAATATTAAGCCTGGATGGGGGAGTAGGCCAGATGTACATATTGAGAAAAGTCATGAGGATGATATTAGTGGTCTGAAATTTTCAAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTGCGCAAAACAAAAGAACCATTAAAAGTATTTGAGGATCTGCCAAATCACTATGCACAAACAAATATTGCCTTCAGTCCTGATGAGCGACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCATGACAGGAGGTTTATTGTGCTTCTTTGATAGAGTAAATCTTGAGCTTGTTTCAAAAGTTGGCATATCACCCACTTGTAGTGTTGTTCAGTGTTCTTGGCATCCCAAACTGAATCAGATCTTTGCAACTACTGGTGATAAAAGCCAAGGTGGGACTCACATACTATATGATCCAACCGTAAGTGAAAGAGGAGCTCTTGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCATGCTTTACCACTATTTAGAGATCAGCCTAGCCGTAAGCGTCAGCGAGAGAAAGTACTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCTATGACAGGTCCTGGCTTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGTGGTATGATCAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCAGCAAAGGATCCAAAGTTCATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCAGTTTTTGCAAAGTCAGATTCTGAGGATGAGGAGAAATGA 1893 0.4638 MKCSGRGSRSLCKERRMEEEGDIYDGVRAQFPLSFGKQSKPQTPLEAIHNATRRSNSNPKTANDLPSVSSSSRDWLNSLRPPKTPTPPPPLPPPDHDDGPMVGPPPPPPTAADEEEDDDDAEMIGPPPPPPIASESEDDSDQDEVGTRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYMVRMYDFQGMNARLESFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDHDGKCIAGGIGDGSIQIWNIKPGWGSRPDVHIEKSHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKTKEPLKVFEDLPNHYAQTNIAFSPDERLFLTGTSVERESMTGGLLCFFDRVNLELVSKVGISPTCSVVQCSWHPKLNQIFATTGDKSQGGTHILYDPTVSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEEK* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1408 630 Pfam WD domain, G-beta repeat 157 191 IPR001680 GO:0005515
Gso19g1408 630 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Gso19g1408 630 Pfam WD domain, G-beta repeat 354 387 IPR001680 GO:0005515
Gso19g1408 630 Pfam WD domain, G-beta repeat 315 341 IPR001680 GO:0005515
Gso19g1408 630 MobiDBLite consensus disorder prediction 81 110 - -
Gso19g1408 630 MobiDBLite consensus disorder prediction 7 25 - -
Gso19g1408 630 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Gso19g1408 630 CDD WD40 158 477 - -
Gso19g1408 630 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Gso19g1408 630 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Gso19g1408 630 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Gso19g1408 630 MobiDBLite consensus disorder prediction 1 144 - -
Gso19g1408 630 ProSitePatterns Trp-Asp (WD) repeats signature. 280 294 IPR019775 -
Gso19g1408 630 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 15 630 - -
Gso19g1408 630 MobiDBLite consensus disorder prediction 609 630 - -
Gso19g1408 630 MobiDBLite consensus disorder prediction 527 547 - -
Gso19g1408 630 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 295 - -
Gso19g1408 630 SUPERFAMILY WD40 repeat-like 141 476 IPR036322 GO:0005515
Gso19g1408 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 396 IPR001680 GO:0005515
Gso19g1408 630 Gene3D - 248 489 IPR015943 GO:0005515
Gso19g1408 630 Gene3D - 105 247 IPR015943 GO:0005515
Gso19g1408 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 200 IPR001680 GO:0005515
Gso19g1408 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 302 IPR001680 GO:0005515
Gso19g1408 630 SMART WD40_4 201 238 IPR001680 GO:0005515
Gso19g1408 630 SMART WD40_4 348 387 IPR001680 GO:0005515
Gso19g1408 630 SMART WD40_4 297 341 IPR001680 GO:0005515
Gso19g1408 630 SMART WD40_4 152 191 IPR001680 GO:0005515
Gso19g1408 630 SMART WD40_4 250 293 IPR001680 GO:0005515
Gso19g1408 630 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 389 - -
Gso19g1408 630 MobiDBLite consensus disorder prediction 35 79 - -
Gso19g1408 630 MobiDBLite consensus disorder prediction 527 558 - -
Gso19g1408 630 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1408 Gso-Chr19 42936819 42940587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1408 262 460 Miscellaneous Gene Families AT5G08390 23.500 4.54e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1408 K24752 - gmx:100815380 1184.47