Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1332 ATGGCGGGAAAAGGAGGGAAGGGGCTTGTGGCCGGAAAAACCACGGCAGCGAACAAGGACAAAGACAAGGATAAGAAAAGGCCTGTCTCTCGTTCATCCCGTGCTGGGATCCAGTTTCCTGTGGGTCGTATCCATAGGCAGTTGAAGCAAAGGGTGCAAGCAAATGGACGTGTGGGGGCGACTGCTGCTGTGTACTTGGCCTCCATTCTGGAATATCTGACTGCTGAGGTGCTGGAGCTGGCGGGGAATGCTAGCAAAGATCTGAAGGTGAAGAGGATCACACCAAGGCACTTGCAACTCGCTATCAGGGGAGACGAAGAGCTTGACACCCTCATCAAAGGGACCATTGCTGGTGGTGGTGTTATCCCTCACATTCACAAGTCCTTGATCAACAAAGCTGCCAAAGAATGA 411 0.5255 MAGKGGKGLVAGKTTAANKDKDKDKKRPVSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKAAKE* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1332 136 MobiDBLite consensus disorder prediction 16 31 - -
Gso19g1332 136 Pfam C-terminus of histone H2A 106 135 IPR032454 -
Gso19g1332 136 SMART h2a4 16 136 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso19g1332 136 Gene3D Histone, subunit A 15 136 IPR009072 GO:0046982
Gso19g1332 136 PANTHER HISTONE H2A 2 135 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso19g1332 136 Pfam Core histone H2A/H2B/H3/H4 15 104 IPR007125 GO:0003677
Gso19g1332 136 SUPERFAMILY Histone-fold 13 113 IPR009072 GO:0046982
Gso19g1332 136 MobiDBLite consensus disorder prediction 1 36 - -
Gso19g1332 136 PANTHER HISTONE H2A 2 135 - -
Gso19g1332 136 CDD H2A 27 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso19g1332 136 PRINTS Histone H2A signature 27 49 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso19g1332 136 PRINTS Histone H2A signature 57 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso19g1332 136 PRINTS Histone H2A signature 72 85 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso19g1332 136 PRINTS Histone H2A signature 86 100 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso19g1332 136 PRINTS Histone H2A signature 113 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1332 Gso-Chr19 42039094 42040625 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1332 K11251 - gmx:100796183 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1332 19 42039094 42040625 Gso3g1330 3 39209821 39211387 GST
Gso19g1332 19 42039094 42040625 Gso2g1186 2 14783993 14785729 PCT
Gso19g1332 19 42039094 42040625 Gso10g0265 10 2808488 2810252 PCT
Gso2g1186 2 14783993 14785729 Gso19g1332 19 42039094 42040625 PCT
Gso10g0265 10 2808488 2810252 Gso19g1332 19 42039094 42040625 PCT