Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1300 ATGAGTGTTCAGCTATCAAGCTTATGGGTCCCCAATTCTCCACCAATACCTCAACACTTCGTTCCCAACCGTGGCAGATTCTCCGCATCAGCTCTCTCATCCCAATCCCCCACTATTCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGAAAATGGATATGGAAACCCCAACAACAACAACTTGTTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGAGCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCGATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTAGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGAACGATGAAGCTTGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGATCCAAAGGGCTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAGTCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTCACAAGAGAATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGACTCTCCTGGGATACTCCCAATGCGGATCAGTGATCAGTCCGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTACGATGTGGCCGATGTTGCTGCAATTCTTGTGCAGATGCTTTCGAAGCTTCCCACAGTAGGCAGAGATGCTCTTTGTAAAAGATACAAGATTGATGTAGATTGTCGAGATGGTAGAATATTCATAGAGAAGCTTGCCGTTCGAGTATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGAAAAGGTAAGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAAGTGA 1101 0.4587 MSVQLSSLWVPNSPPIPQHFVPNRGRFSASALSSQSPTIQIIGVGGPSWRENGYGNPNNNNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLSKLPTVGRDALCKRYKIDVDCRDGRIFIEKLAVRVFNGDVHQAAFRVLADFRKGKFGWTALERPPK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1300 366 Pfam 50S ribosome-binding GTPase 210 298 IPR006073 GO:0005525
Gso19g1300 366 PRINTS GTP1/OBG GTP-binding protein family signature 210 230 IPR006073 GO:0005525
Gso19g1300 366 PRINTS GTP1/OBG GTP-binding protein family signature 256 271 IPR006073 GO:0005525
Gso19g1300 366 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 15 366 - -
Gso19g1300 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 325 IPR027417 -
Gso19g1300 366 Gene3D - 268 356 IPR023179 -
Gso19g1300 366 Gene3D - 90 263 IPR027417 -
Gso19g1300 366 PANTHER DAR GTPASE 3, CHLOROPLASTIC 15 366 - -
Gso19g1300 366 CDD YlqF 92 263 - -
Gso19g1300 366 TIGRFAM GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 90 362 IPR019991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1300 Gso-Chr19 41610699 41615277 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1300 K19828 - gmx:100784201 732.635