Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1193 ATGAACAAGTCAATACTCTTACTCCTATTATTTTTCCTCCTCAACCCATCCCTTCTCGCCACGTCACACCCTCTTAACCCAATCCCAGTCACGCTCTCCGTCGCCGATTTCGGCGCCGCCGGCGACGGCCTCCGCTACGACACGGAGGCAATCCAGTCGGCCATCAACTCGTGCCCAGAGGGGGATCCCTGCCATGTTACCTTCCCAGCGCCGGGAAAGTACCTGACGGCCACCGTGTTCCTGAAATCCGGCGTGGTGCTGAACGTGGAGTCCGGGGCCACCATCCTTGGCGGCACGAGGCTGGAGGACTACCCCGAGGAGTCGTGGCGGTGGTACGTGGTTGTTGCGGAGAACGCGACGGACGTGGGAATCCGCGGCGGCGGAGCGGTGGACGGGCAAGCTGCGAAGTTCGTGGTGAGGGAAGATCCGAGGAAGAACGTTATGGTTAGTTGGAATCAAACAGGGGCTTGCTTGGGAGACGAATGCAGACCCAGGCTCATCGGTTTTCTCGATTGCAACAACGTTCAAGTCTCTAACATTACTCTCAACCAACCTGCTTATTGGTGCTTGCACTTGGTGCGGAGTAACAACATATGCATTCAAGATATTGCAATTTATGGGGACTTTAATATACCGAACAATGATGGGATTGATATTGAGGACTCAAATAACACAGTAATCACTCGATGCCACATTGATACAGGGGATGATGCAATCTGTCCAAAGTCATCCACAGGTCCTGTTTACAACCTTACAGTCACTGACTGTTGGATTCGATCCAAATCTTCCGCAATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGATAATATTGCTATTGTTGATTCTCATAGAGGGATTGGATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTATTCTCAAACATGAATATCAGCACAAGATACTATGATTCATTATGGTGGGGGAGAGCAGAGCCTATCTATGTCACTAGTTGCCCACGAGACTCAAGCTCAAAGGAGGCTTCAATCTCAAATGTACTTTTCATTAACATTACTGCAAATTCGGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGTTAAGAAATTTGAGATTCATTGATATGGACATTACTTACAGAAGGTTCACCAATTATGCTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAGTTGGTAAAACACAGGACTGCAGGGATTATGATGGAGCACATTGAAGGGCTTGAGGTTAAAAATGTTGAAATGAGATGGTCAAACGATCAACTAGAGCAGTGGAATAATCCTCTAGAGTTCAGGCCATCTACTGTGAATAACATCTCTTTCCTTAATTTTAATTCTGGTTTGTATACAAATAGCAAATCAAATTATTAA 1401 0.4654 MNKSILLLLLFFLLNPSLLATSHPLNPIPVTLSVADFGAAGDGLRYDTEAIQSAINSCPEGDPCHVTFPAPGKYLTATVFLKSGVVLNVESGATILGGTRLEDYPEESWRWYVVVAENATDVGIRGGGAVDGQAAKFVVREDPRKNVMVSWNQTGACLGDECRPRLIGFLDCNNVQVSNITLNQPAYWCLHLVRSNNICIQDIAIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTDCWIRSKSSAIKLGSASWFDFKHFVFDNIAIVDSHRGIGFQIRDGGNVSDIVFSNMNISTRYYDSLWWGRAEPIYVTSCPRDSSSKEASISNVLFINITANSENGIFLSGSKRGLLRNLRFIDMDITYRRFTNYAGGLLDYRPGCQELVKHRTAGIMMEHIEGLEVKNVEMRWSNDQLEQWNNPLEFRPSTVNNISFLNFNSGLYTNSKSNY* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1193 466 PANTHER PECTIN LYASE-RELATED 23 458 - -
Gso19g1193 466 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 23 458 - -
Gso19g1193 466 SMART pbh1 339 364 IPR006626 -
Gso19g1193 466 SMART pbh1 195 221 IPR006626 -
Gso19g1193 466 SMART pbh1 222 243 IPR006626 -
Gso19g1193 466 SMART pbh1 248 269 IPR006626 -
Gso19g1193 466 Pfam Glycosyl hydrolases family 28 63 382 IPR000743 GO:0004650|GO:0005975
Gso19g1193 466 Gene3D - 20 390 IPR012334 -
Gso19g1193 466 SUPERFAMILY Pectin lyase-like 2 394 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1193 Gso-Chr19 40418819 40421845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1193 30 460 Glycoside Hydrolase AT3G57790 68.707 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1193 - - gmx:100794954 952.584