Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1181 ATGGTTGTTCTGAGCGACTGCAGAGACATTTGCAAGGTGCTGGTGTGGTTCACACACACAAGGTCCCTCCGGAAGGGTCTCCAACTCCATGGGCAAGTTATCAAATTAGGGTTCGAAGCCATTCCATTGGTGTGCCACCACTTGATCAACTTCTACTCCAAAACCAACCTCCCTCACTCTTCGCTCAAACTCTTCGATTCTTTTCCCCACAAATCCGCCACCACATGGAGCTCCGTCATCTCCTCCTTCGCCCAGAACGACCTCCCCCTCCCTGCTCTCCGCTTCTTCCGCCGCATGCTCCGCCACGGCCTCCTCCCCGACGATCACACACTCCCCACCGCCGCCAAGTCCGTCGCTGCCCTCTCCTCCCTCCCCCTCGCCCTCTCCCTCCACGCCCTCTCCCTCAAAACCGCCCACCACCACGACGTCTTCGTCGGAAGCTCCCTCGTCGACACGTACGCTAAATGCGGCGACGTCAACCTCGCGCGCAAGGTGTTCGACGAAATGCCTCACAAAAACGTCGTCTCCTGGAGCGGTATGATATACGGATATTCTCAGATGGGTCTCGACGAGGAGGCTTTGAACCTGTTTAAACGTGCTCTGGAGCAGGATTATGATATAAGGGTTAATGATTTTACGCTTTCTAGTGTTTTGAGGGTGTGTAGTGCTTCCACGTTGTTTGAGCTGGGGAAGCAAGTGCATGGACTGTGCTTTAAAACAAGTTTTGATTCTTCATGCTTTGTGGCTAGCTCGTTGATCTCGTTGTACTCTAAGTGCGGGGTTGTAGAAGGAGGTTACAAGGTTTTTGAGGAGGTGAAAGTTAGGAACCTTGGCATGTGGAACGCAATGTTGATTGCGTGTGCTCAGCATGCACATACAGGGAGAACATTTGAGCTGTTTGAAGAGATGGAGCGTGTTGGGGTGAAGCCTAACTTCATCACATTTTTGTGTCTGCTTTATGCGTGCAGCCATGCAGGGTTGGTGGAGAAGGGGGAACACTGCTTTGGGTTGATGAAGGAGCATGGTATTGAACCGGGGTCGCAGCATTATGCTACATTGGTGGATTTGCTTGGTCGTGCTGGGAAGTTGGAGGAAGCGGTTCTGGTTATCAAGGAAATGCCAATGCAGCCCACAGAATCTGTTTGGGGGGCTTTGTTGACAGGGTGTAGGATTCATGGAAACACTGAATTGGCTTCCTTTGTGGCTGATAAGGTTTTTGAGATGGGTGCTGTGAGTTCTGGGATTCAGGTTTTGTTGTCTAATGCTTATGCTGCTGCTGGAAGATGGGAGGAAGCGGCAAGGGCGAGGAAGATGATGAGGGATCAAGGAATAAAGAAGGAAACTGGGTTGAGTTGGGTGGAGGAGGGGAATAGGGTTCATACATTTGCTGCTGGGGATAGGTCTCATGGGAAAACCAGGGAAATTTATGAGAAGTTGGAGGAGTTGGGAGAGGAAATGGCGAAAGCCGGTTATGTTGCAGACACTTCTTTTGTGTTGAAAGAAGTGGATGGGGATGAGAAAAGTCAAACTATAAGGTATCATAGTGAAAGGTTGGCCATTGCGTTTGGACTTATTACTTTCCCTCCAGAATGGCCTATCAGGGTAATGAAGAACTTGCGAGTTTGTGGTGATTGCCACACTGCCATCAAGTTTATTAGCAAGTGTACTGGAAGGGTGATTATTGTGAGGGACAATAACCGGTTCCACCGATTTGAGGATGGGAAATGCACTTGTGGAGATTATTGGTGA 1749 0.5003 MVVLSDCRDICKVLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1181 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Gso19g1181 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Gso19g1181 582 PANTHER OS01G0913400 PROTEIN-RELATED 8 526 - -
Gso19g1181 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Gso19g1181 582 Gene3D Tetratricopeptide repeat domain 203 510 IPR011990 GO:0005515
Gso19g1181 582 Gene3D Tetratricopeptide repeat domain 7 131 IPR011990 GO:0005515
Gso19g1181 582 Gene3D Tetratricopeptide repeat domain 132 200 IPR011990 GO:0005515
Gso19g1181 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Gso19g1181 582 Pfam Pentacotripeptide-repeat region of PRORP 192 364 IPR033443 -
Gso19g1181 582 Pfam PPR repeat 75 104 IPR002885 -
Gso19g1181 582 Pfam PPR repeat 147 173 IPR002885 -
Gso19g1181 582 PANTHER BNAA10G28390D PROTEIN 8 526 - -
Gso19g1181 582 Pfam E+ motif 459 486 IPR046849 -
Gso19g1181 582 Pfam E motif 392 454 IPR046848 -
Gso19g1181 582 Pfam DYW family of nucleic acid deaminases 490 582 IPR032867 GO:0008270
Gso19g1181 582 TIGRFAM PPR: pentatricopeptide repeat domain 148 174 IPR002885 -
Gso19g1181 582 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Gso19g1181 582 TIGRFAM PPR: pentatricopeptide repeat domain 350 373 IPR002885 -
Gso19g1181 582 TIGRFAM PPR: pentatricopeptide repeat domain 75 107 IPR002885 -
Gso19g1181 582 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1181 Gso-Chr19 40224685 40226773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1181 22 582 Glycoside Hydrolase AT3G49170 36.427 2.64e-120 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1181 - - gmx:100800235 1136.32