Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1131 ATGTCTCTTTTGCCTCGTCTTCATATCTTAGCTAGGCCTTTACTCTCCCCCTTCTGCCAGAATGGAGGTAGACAAATAATGAGCAGAATTGGCATGACTGCCTGCTCTCTTTCTTCTGCAGATTTTGAATGTGATGCGATCCATGATGATGTCAAAGCAGCAGAGAAAGATAATGCACTTTGCTTGGCTGTCTCGCAGCTTGCTAGCGAGTTTAGCAAGGAATCTATGTTATCTCTGCAGAAGATTTTTGGTGTACGCCGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGATCTAGCTCTGGGAATTGGTGGACTACCAAAGGGCAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCAATTCAAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCATTGGACTTCTCACTTATGGAATCGATGGGCATAGATACTGAAAACCTTCTTATATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGTGCTGTAGATGTGATTGTGATTGACAGTGTTGCTGCCCTCGTCCCCAAATGTGAACTTGATCAATTAGGAGTTACCACTAATCGTGATTTACAATCACGAATGATGACTCAAGCACTGCGGAAGATTCACTATTCATTATCTCATTCTCAAACTCTCATTGTTTTCATTAATCAGATTAGATTGAGTCCAAAATCAGCCAAGGAATATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGAGTGAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTATGATCTGTGCTCAAGTGGTAAAAAATAAACTAGCACCAGCAGCAACGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGATGTCTTAGATTTGGCTTGTGAACATGGAATCTTTGTGAAACATGAGGGAAGCTACTTTATTGAAGGTAACAGTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATCATGCTGTTTGTGACAAGGTGGTTAAGGATATGAGAAGACTTTATTTTTAA 1149 0.403 MSLLPRLHILARPLLSPFCQNGGRQIMSRIGMTACSLSSADFECDAIHDDVKAAEKDNALCLAVSQLASEFSKESMLSLQKIFGVRRAHVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLAIQIIKEAQKLGGYCAYLDVENALDFSLMESMGIDTENLLISHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLGVTTNRDLQSRMMTQALRKIHYSLSHSQTLIVFINQIRLSPKSAKEYGSVEEVTCGGNALRFYAAVRLRLSRVRLIKTEDKVEGVMICAQVVKNKLAPAATKRAELGIKFGRGFCHESDVLDLACEHGIFVKHEGSYFIEGNSFDSREAAELFLAQNHAVCDKVVKDMRRLYF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1131 382 PANTHER RECA 30 382 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso19g1131 382 PRINTS RecA protein signature 145 174 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso19g1131 382 PRINTS RecA protein signature 179 208 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso19g1131 382 PRINTS RecA protein signature 217 246 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso19g1131 382 PRINTS RecA protein signature 265 293 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso19g1131 382 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso19g1131 382 Gene3D - 86 380 IPR027417 -
Gso19g1131 382 ProSiteProfiles RecA family profile 1. 87 246 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Gso19g1131 382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 311 IPR027417 -
Gso19g1131 382 ProSitePatterns recA signature. 268 276 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Gso19g1131 382 ProSiteProfiles RecA family profile 2. 256 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Gso19g1131 382 Pfam recA bacterial DNA recombination protein 59 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso19g1131 382 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 30 382 - -
Gso19g1131 382 SMART AAA_5 109 289 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1131 Gso-Chr19 39475922 39482061 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1131 - - gmx:100777423 727.628