Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1117 ATGGCTCAATTGCTATCCTCTTCTTGCTCCTTGACTGTCTGCTCTAGAAATAAACCTTACTTAAAACCCTTTGACAAATGTTCAACACCGTTTTCTATGAAGGTTGCTTGCAATAATTCCAAATCTCCATTTAGAAGGCTTTTCTTGCAAGAACAGAAGCCTAGAAAAGATTCTCTAGTAGTACATGCTGCTGCAGTTTCAACTAGCCAGGGAACCCCAGTTCAAACTAGCTCTAGCGACCCTTTTAAACAACAGCGAGTCATGGTCATTGGTGGAGATGGATACTGTGGTTGGGCAACTGCCCTCCACCTTTCTAACAAGGGTTATGAGGTTGCCATTGTTGACAGCCTTGTTCGGCGCCTTTTTGATCACCAGCTTGGACTGGATTCTCTAACACCAATTTCTTCCATCCAGAATCGCCTTCAGTGTTGGAAATCTCTCACTGGAAAAACTATTGAGCTCTACATCGGTGACATATGTGATTTTGAGTTCTTATCTGAAACCTTCAAGTCATTTGAGCCTGATGCTGTTGTCCACTTTGGGGAACAGCGGTCTGCTCCCTACTCTATGATAGACCGGTCAAGAGCTGTGTATACCCAGCAAAACAATGTTATTGGGACACTGAATGTGCTCTTTGCCATAAAAGAGTTCAGAGAGCAATGTCATCTGGTGAAGCTTGGGACCATGGGTGAATATGGGACACCCAATATAGATATTGAGGAAGGCTATATTACCATTACTCACAATGGAAGGACAGACACTTTGCCATATCCCAAGCAAGCTAGCTCATTCTACCATCTAAGCAAGGTACATGATTCACATAACATAGCTTTCACTTGCAAAGCTTGGGGGATTCGAGCAACTGATCTGAACCAAGGAGTTGTATATGGGGTCAGAACAGATGAGACTGCAATGCATGAAGAGCTGTATAACAGGTTTGATTACGATGGAATATTTGGAACTGCATTGAATCGGTTCTGTGTTCAGGCTGCTGTTGGTCATCCACTTACTGTATATGGTAAAGGAGGCCAGACTAGGGGCTTCCTTGACATAAGAGATACAGTTCAATGTGTCGAGCTTGCCATCGCAAACCCTGCAAAGCCTGGGGAGTTCCGAGTCTTCAACCAATTCACTGAGCAGTTTTCAGTGAATCAACTTGCCAACCTTGTTACAAAAGCGGGTGAGAAGCTGGGCATTGAGGTGAAAACTATCAATGTTCCTAACCCGAGAGTCGAGGCAGAAGAGCATTACTACAATTGCAAGAACACTAAACTTGTTGATCTGGGACTGAGACCACACTTTCTTTCAGACTCTCTCCTTGATTCACTGCTCAATTTTGCTGTTCAGTACAAAGATCGTGTTGACACAAAACAAATTATGCCTAGTGTGTCTTGGAAGAAAATTGGGGTTAAAACAAAAACTGTTACAGCCTAA 1434 0.4331 MAQLLSSSCSLTVCSRNKPYLKPFDKCSTPFSMKVACNNSKSPFRRLFLQEQKPRKDSLVVHAAAVSTSQGTPVQTSSSDPFKQQRVMVIGGDGYCGWATALHLSNKGYEVAIVDSLVRRLFDHQLGLDSLTPISSIQNRLQCWKSLTGKTIELYIGDICDFEFLSETFKSFEPDAVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTLNVLFAIKEFREQCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELYNRFDYDGIFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVQCVELAIANPAKPGEFRVFNQFTEQFSVNQLANLVTKAGEKLGIEVKTINVPNPRVEAEEHYYNCKNTKLVDLGLRPHFLSDSLLDSLLNFAVQYKDRVDTKQIMPSVSWKKIGVKTKTVTA* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1117 477 Pfam NAD dependent epimerase/dehydratase family 87 374 IPR001509 -
Gso19g1117 477 PANTHER BNAA03G52320D PROTEIN 58 475 - -
Gso19g1117 477 CDD SQD1_like_SDR_e 86 466 - -
Gso19g1117 477 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 58 475 - -
Gso19g1117 477 Gene3D - 86 377 - -
Gso19g1117 477 Gene3D - 293 454 - -
Gso19g1117 477 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 456 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1117 Gso-Chr19 39344615 39347866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1117 1 476 Acyl Lipid Metabolism Gene Families AT4G33030 78.750 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1117 K06118 - gmx:100816616 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1117 19 39344615 39347866 Gso3g1123 3 36544037 36547348 GST