Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1111 ATGGCTCTAATCGCTGCCAGGATTCTCGGTTCCAATTCGAGGCCCGCGGTCGCGCTCCACCGCTGGCAGTGGCCGGCGTACTCCTCCGCCTCCGCGGCGGTGGCGGAGCCGGAGACCACGGAGGTGAAGGACTACGCCGATTACCGGCGCTCCCTGTACGGACAGATCACGCACAAGGCGCTCCTCGTCGACGCCGTTGGCACGCTCGTCCTCCCTTCGCAGCCCATGGCTCAGATATATAGAAAGATTGGGGAGAAGTATGGAGTGGAGTATTCGGAGGATGAGATACTGTTCAGATACAGAAGAGCGTATGGTCAGCCTTGGGGAAAATCTCGTCTCAGATATGTTAATGATGGTAGGCCTTTTTGGCAATACATAGTTAGTTATTCCACTGGCTGTTCAGATCCTCAATATTTTGAAGAACTTTATAACTATTATACAACGGACAAGGCATGGCACCTCAATGATACTGGTGCAGAAGAAGTATTCAGAGCTCTTAGAGAATCAGGTGTGAAATTAGCTGTTGTGTCAAACTTTGACACTAGATTAAGACCTCTCTTGCGGGCATTAAATTGTGACAATTGGTTTGATGCAGTAGCAGTGTCAGCTGAGGTTGCAGCAGAGAAACCAAATCCAACTATATTTCTCAAAGCATGTGAATTATTGGATGTAAAACCCGAGGATGCTGTTCATGTTGGGGATGACCGCAGAAATGATATATGGGGTGCCAGGGATGCTGGCTGTGATGCTTGGCTTTGGGGAAGCGATGTTCACTCCTTTAAGGAGGTAGCACAGAGGATTGGGGTTCAGGTCTGA 816 0.4975 MALIAARILGSNSRPAVALHRWQWPAYSSASAAVAEPETTEVKDYADYRRSLYGQITHKALLVDAVGTLVLPSQPMAQIYRKIGEKYGVEYSEDEILFRYRRAYGQPWGKSRLRYVNDGRPFWQYIVSYSTGCSDPQYFEELYNYYTTDKAWHLNDTGAEEVFRALRESGVKLAVVSNFDTRLRPLLRALNCDNWFDAVAVSAEVAAEKPNPTIFLKACELLDVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVAQRIGVQV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1111 271 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 59 253 - -
Gso19g1111 271 Gene3D - 74 147 IPR044924 -
Gso19g1111 271 CDD HAD_dREG-2_like 159 270 - -
Gso19g1111 271 PANTHER - 34 271 - -
Gso19g1111 271 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 168 247 IPR006439 -
Gso19g1111 271 Gene3D - 63 255 IPR023214 -
Gso19g1111 271 Pfam Haloacid dehalogenase-like hydrolase 67 250 IPR041492 -
Gso19g1111 271 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 59 252 IPR011949 -
Gso19g1111 271 SUPERFAMILY HAD-like 59 262 IPR036412 -
Gso19g1111 271 SFLD Haloacid Dehalogenase 59 253 - -
Gso19g1111 271 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 34 271 - -
Gso19g1111 271 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 58 69 IPR006439 -
Gso19g1111 271 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 166 179 IPR006439 -
Gso19g1111 271 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 196 212 IPR006439 -
Gso19g1111 271 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 214 234 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1111 Gso-Chr19 39250622 39256431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1111 - - gmx:100789672 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1111 19 39250622 39256431 Gso3g1117 3 36426543 36430983 GST