Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1106 ATGTTTTCTTCTGCAATTTCTCAGAAGCCCTTCCTTCAGTCCCTCGTCATTGATCGTTACGCTCAGAGCACAACTGCTGCAACCAGGTGGGAGTGCTTGGGGTTTAACAAGTCAGAAAATTTCAGTACCAAGAGAGTGTTGCGTGCAGAGGGGTTCAAGTTGAATTGCTTGGTTGAAAATAGAGAGATGGAAGTGGAGTCATCATCATCATCTTTGGTGGATGATGCTGCCATGAGCTTAAGTGAAGAGGATTTAGGGGAGCCTAGTATTTCAACAATGGTGATGAATTTCGAGAGTAAGTTTGATCCTTTTGGAGCAATTAGTACCCCGCTTTACCAAACGGCTACTTTTAAGCAGCCTTCTGCAATAGAAAATGGTCCCTATGACTATACCAGAAGTGGAAATCCTACTCGTGATGCTTTAGAAAGTTTACTAGCAAAGCTTGATAAAGCAGATAGAGCCCTGTGCTTCACCAGTGGAATGGCTGCTTTGAGTGCTGTTGTTCGTCTTGTTGGAACTGGTGAGGAAATTGTCACCGGAGATGATGTATATGGTGGCTCAGATAGGTTGCTGTCTCAAGTAGTTCCAAGGACTGGAATTGTGGTGAAACGGGTAAATACATGTGATCTAGATGAGGTTGCTGCTGCCATTGGACTCAGGACTAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCTCGGCTTCAAATTTCTGATATTCGAAAAATATCAGAGATGGCTCATTCACATGGTGCTCTTGTGTTAGTGGACAATAGTATAATGTCACCTGTGTTGTCTCGGCCATTGGAACTTGGAGCAGATATTGTCATGCACTCAGCTACAAAATTTATTGCTGGACATAGTGACATTATGGCTGGTGTGCTTGCTGTGAAGGGTGAAAAGTTGGGAAAGGAAATGTATTTCTTGCAAAATGCAGAGGGTTCAGGCTTAGCACCATTTGACTGTTGGCTTTGTTTGCGAGGAATCAAGACAATGGCCCTGCGAATTGAAAAGCAACAGGATAACGCACAGAAGATTGCAGAGTTCCTTGCCTCCCATCCTCGAGTGAAGGAAGTGAATTATGCTGGCTTGCCTGGTCATCCTGGTCGTGATTTACACTATTCTCAGGCAAAGGGTGCAGGATCTGTGCTTAGCTTCTTGACTGGTTCATTGGCACTTTCAAAGCATATTGTTGAAACTACCAAATACTTCAGTATAACCGTCAGCTTTGGGAGTGTGAAGTCCCTCATTAGCATGCCATGCTTTATGTCACATGCAAGCATACCTGCTGCAGTTCGCGAGGCCAGAGGTTTAACTGAAGATCTTGTACGAATATCTGTGGGAATTGAGGATGTGAATGATCTCATTGCTGATCTTGGCAATGCACTTAGAACTGGACCTCTTTAA 1404 0.4416 MFSSAISQKPFLQSLVIDRYAQSTTAATRWECLGFNKSENFSTKRVLRAEGFKLNCLVENREMEVESSSSSLVDDAAMSLSEEDLGEPSISTMVMNFESKFDPFGAISTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALSAVVRLVGTGEEIVTGDDVYGGSDRLLSQVVPRTGIVVKRVNTCDLDEVAAAIGLRTKLVWLESPTNPRLQISDIRKISEMAHSHGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLGKEMYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQDNAQKIAEFLASHPRVKEVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRISVGIEDVNDLIADLGNALRTGPL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1106 467 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 33 467 IPR000277 GO:0019346|GO:0030170
Gso19g1106 467 Gene3D - 89 330 IPR015421 GO:0003824
Gso19g1106 467 SUPERFAMILY PLP-dependent transferases 102 463 IPR015424 -
Gso19g1106 467 Gene3D Aspartate Aminotransferase, domain 1 331 464 IPR015422 GO:0003824
Gso19g1106 467 PANTHER BNAC04G24570D PROTEIN 33 467 - -
Gso19g1106 467 ProSitePatterns Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 273 287 IPR000277 GO:0019346|GO:0030170
Gso19g1106 467 Pfam Cys/Met metabolism PLP-dependent enzyme 92 462 IPR000277 GO:0019346|GO:0030170
Gso19g1106 467 TIGRFAM cysta_beta_ly_E: cystathionine beta-lyase 91 464 IPR006238 GO:0004121|GO:0071266
Gso19g1106 467 CDD CGS_like 105 463 IPR000277 GO:0019346|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1106 Gso-Chr19 39168512 39175546 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1106 K01760 - gmx:100812354 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1106 19 39168512 39175546 Gso3g1111 3 36350790 36356977 GST