Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1087 ATGTGGGCTCTTCGTCGAGCTTCGATTCCTCTCAGGACCCGAGGGTTTAATGTGAGAGCTTCCTGTGTCAAATTAGCGGGAACTAGTTCTGTTGAAGAAGAGGATGTTATCAATGAATCTCATGGAATAACGTATGGTGGATTTTTATCGCCGAATATGCGATTCCATTCGGTACATAATGCCTCCCTGAATTTTACTGTGGGAAAACGTGCGCTTTCTTCAAGTAGCACGAAAGAGGAGGATGATTTGGAGGATGGGTTTTCCGAGCTGGAGATGCCTGCTGGCAGTGGATATGAAAGTGAGGATCTGTTAACTTCCGATGATGGCGACCTATCGGATGATGGTCAGAAGGAGGATGTTGAGGAGCCACCACACAATGAGGTTGATGAGGCGGCCAAGGAGAAAGGAAACCCGCGTCGTGGAAGGGTTGAATCAAAGCTATTCAATGAGATCATGAATGCACAGGGTATCTCTCTTCATTCGGTTCTGGAAAAATGGTTAGAAAAAGGGAATGAGCTTACCAGAGAGGAGGTTTCGCTTGCCATGCTTTATCTTCGAAAGCGTAAGCTGTTTGGGAGAGCTTTGCTGCTCTCAGAATGGCTCGAGTCAAAAAAGGAGTTTGAGTTTATTGAAAGAGATTATGCAAGTCGGCTTGATTTAATTGCCAAATTGCGTGGCTTACATAAGGCAGAGGTTTACATTGAGACTATTCCAGAATCTTGTAGCAGAGAGATAATGTACCGGACTTTATTGGCTAACTGTGTCAGTCAGAATAATGTGAAGAAAGCAGAGGAAGTTTTTAGTAAAATGAAGGACTTGGATTTTCCTATTACAGTATTTACTTGCAATCAGTTGCTATTTCTGTATAAGAGGAATGACAGGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATATCAACCCTTCTTCTCATACTTACTCGATCTTAATAGACACAAAAGGCCAGTCCAAAGATATTGATGGAATGGATCAAATTGTTGATAGGATGAAGGCTCAAGGCATTGAACCAGACATCAACACGCAGGCTGTTTTGATTAGGCATTACATCTCTTCTGGGCTTCAAGATAAAGCTGAAACTTTATTAAAGGAGATGGAAGGGGAAAACTTAAAACAGAATCGGTGGCTATGCCGAATTTTGCTTCCCCTCTATGCAAACCTAGGAAAGGTGGATGAAGTGGGAAGAATTTGGAAAGTCTGTGAGACAAACCCTCGGTATGATGAGTGTCTAGGAGCAATTGAAGCTTGGGGAAAGTTGAATAAAATTGATGAAGCAGAGAAAGTTTTTGAGATTATGGTAAAGAAATGGAAGCTTTCTTCCAAGACCTGTTCCATACTGCTGAAGGTTTATGCAAATAATAAGATGCTAATGAAGGGTAAGGATCTTATTAAGCGAATGGGAGATGGTGGGTGCCGAATTGGCCCATTGACCTGGGATGCAATAGTGAAACTTTATGTCCAAGCTGGGGAAGTAGAGAAGGCGGATTCTGTTCTTCAGAAGGCAGCCCAGCAGAGCCAGATGAAGCCAATATTTTCTACCTACCTAACTATTTTGGAACAGTATGCTAATAGGGGTGACATCCATAACTCGGAGAAGATTTTTCTTAGAATGAAACAAGCTGATTATCCATCTAAAGCAAAGATGTACCAAGTTCTAATGAATGCCTATATAAATGCAAAGGTTCCAGCATATGGGATTAGGGACAGGTTGAGAGCTGATAGTATATATCCCAATAGAAATTTGGCAAACCAGTTGGTTCAAGTTGATGGATTTAGGAAGAATCCAGTCTCCGATTTGCTTGATTGA 1833 0.4157 MWALRRASIPLRTRGFNVRASCVKLAGTSSVEEEDVINESHGITYGGFLSPNMRFHSVHNASLNFTVGKRALSSSSTKEEDDLEDGFSELEMPAGSGYESEDLLTSDDGDLSDDGQKEDVEEPPHNEVDEAAKEKGNPRRGRVESKLFNEIMNAQGISLHSVLEKWLEKGNELTREEVSLAMLYLRKRKLFGRALLLSEWLESKKEFEFIERDYASRLDLIAKLRGLHKAEVYIETIPESCSREIMYRTLLANCVSQNNVKKAEEVFSKMKDLDFPITVFTCNQLLFLYKRNDRKKIADVLLLMENENINPSSHTYSILIDTKGQSKDIDGMDQIVDRMKAQGIEPDINTQAVLIRHYISSGLQDKAETLLKEMEGENLKQNRWLCRILLPLYANLGKVDEVGRIWKVCETNPRYDECLGAIEAWGKLNKIDEAEKVFEIMVKKWKLSSKTCSILLKVYANNKMLMKGKDLIKRMGDGGCRIGPLTWDAIVKLYVQAGEVEKADSVLQKAAQQSQMKPIFSTYLTILEQYANRGDIHNSEKIFLRMKQADYPSKAKMYQVLMNAYINAKVPAYGIRDRLRADSIYPNRNLANQLVQVDGFRKNPVSDLLD* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1087 610 MobiDBLite consensus disorder prediction 118 140 - -
Gso19g1087 610 MobiDBLite consensus disorder prediction 103 117 - -
Gso19g1087 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Gso19g1087 610 Gene3D Tetratricopeptide repeat domain 418 604 IPR011990 GO:0005515
Gso19g1087 610 Gene3D Tetratricopeptide repeat domain 242 417 IPR011990 GO:0005515
Gso19g1087 610 MobiDBLite consensus disorder prediction 70 140 - -
Gso19g1087 610 Pfam PPR repeat 521 549 IPR002885 -
Gso19g1087 610 Pfam PPR repeat 422 444 IPR002885 -
Gso19g1087 610 Pfam PPR repeat 486 509 IPR002885 -
Gso19g1087 610 Pfam PPR repeat 451 480 IPR002885 -
Gso19g1087 610 Pfam Pentacotripeptide-repeat region of PRORP 246 404 IPR033443 -
Gso19g1087 610 PANTHER OS12G0527900 PROTEIN 53 610 - -
Gso19g1087 610 PANTHER OS01G0280400 PROTEIN 53 610 - -
Gso19g1087 610 TIGRFAM PPR: pentatricopeptide repeat domain 246 277 IPR002885 -
Gso19g1087 610 TIGRFAM PPR: pentatricopeptide repeat domain 314 348 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1087 Gso-Chr19 38860544 38864840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1087 151 549 EF-hand Containing Proteins AT1G02150 25.000 2.20e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1087 - - gmx:100500196 1187.17