Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1079 ATGAACAATGTTGCTGAAAGACCGCTTAACGGAGACGTAGAGGATGATGATGAGGATGATGGTGGAGGCCTTGAAGCCTGGGAGAGAACTTATGCTGAGGATAGATCATGGGAGGCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAGATACTACTGCCATTTACCATGCCCAATATCGCAGGCGCCTTCGTACCCTTGCTGCCACAGCAGCTACTGCACGGATTCAGAAGGGGCTTATACGATACCTGTACATTGTTGTTGACCTGTCCAAGGCATCTTCAGAGAGAGACTTTCGACCTAGTAGGATGGCTGTGATGGGGAAACAGGTTGAGGCATTTATCAGGGAATTCTTTGATCAGAATCCACTTAGTCATGTTGGTCTGGTGACTATAAAAGATGGGATTGCTCATTGCATAACAGAACTTGGTGGCAGTCCTGAGTCTCACATTAAAGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCCTCCTTACAAAACGCACTGGAGCTTGTTCTTGGATATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATCTTATATTCAGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAAGAGTAAAATAAGGTGCTCAGTCATTGGTCTTGCAGCTGAAATGTTTGTTTGCAAACATCTCTGCCAGGAAACTGGAGGGACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTGATCCTAGAGCATGCACCTCCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGTTTCCCACAACGATCAGCTGAGGGTTCTGTCGCAATATGCACATGTCATGAAGAGGCCAAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGTGTGTGTGGATTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTATTTCCTATAGTGATGTTTGATGAGGTCACTCCATCATCTCAAAATGATTCAAACCGCAGTTTTCCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGAAACAAGCCTGGACTTTCTGTTATTTGCCCAAAATGCAAGCAACAATTCTGCCTCGATTGTGACATCTACGTTCATGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTCCAGGCACTCTAAGTCTGTAACTGCTTCCCAATGA 1263 0.4473 MNNVAERPLNGDVEDDDEDDGGGLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSKASSERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSSQNDSNRSFPNTCFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1079 420 Gene3D von Willebrand factor, type A domain 78 263 IPR036465 -
Gso19g1079 420 ProSiteProfiles VWFA domain profile. 84 223 IPR002035 -
Gso19g1079 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 417 IPR013083 -
Gso19g1079 420 TIGRFAM ssl1: transcription factor ssl1 300 409 IPR012170 GO:0000439|GO:0006289|GO:0006351
Gso19g1079 420 CDD vWA_transcription_factor_IIH_type 80 262 IPR007198 -
Gso19g1079 420 SUPERFAMILY Cysteine-rich domain 335 408 IPR046349 -
Gso19g1079 420 PIRSF TFIIH_SSL1 2 410 IPR012170 GO:0000439|GO:0006289|GO:0006351
Gso19g1079 420 Pfam Ssl1-like 88 278 IPR007198 -
Gso19g1079 420 MobiDBLite consensus disorder prediction 1 24 - -
Gso19g1079 420 SMART VWA_4 82 258 IPR002035 -
Gso19g1079 420 SMART C1_4_2 361 409 IPR004595 GO:0006281|GO:0008270
Gso19g1079 420 Pfam TFIIH C1-like domain 361 409 IPR004595 GO:0006281|GO:0008270
Gso19g1079 420 ProSitePatterns Zinc finger C2H2 type domain signature. 382 402 IPR013087 -
Gso19g1079 420 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 17 407 - -
Gso19g1079 420 SUPERFAMILY vWA-like 79 247 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1079 Gso-Chr19 38751118 38755099 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1079 K03142 - gmx:100803090 832.017