Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1050 ATGGCTTCCTTCCCTCCTCCTGGTTCATTCACTCTCTGCGAAGTCAATCGTGACCTAATCACCGTCGACGCCCTGTCCGACGATCGAGCCAACCAAACCTACGGAAAAATCCTCGGATTGGTGTTCAGTCCCGTCCCGTTTCACTATCTGGAGAACGACGCTTCCGATCAGGAAGGTCCAACAGCGACGGAGACCGCTGCCGGAGAAAGCGTTCAGAGGAAAAGTCCGGTGGCACTCTTGCAAGGGCTTGTAAACAACTATCTCGGACGCCTCTTTTACCCTAACGATGTGCATTTGTTGCCGGAGGTTGATCTTCAAGGAGTAAGCTGGCACCCTAATAAGCATATAATTGCTTTTATCTCTGCCCCAACACAAGTTTTAGTTCGTGATTACCAAGAGTCTGAGGGAAAGGATCCAAGTATTTTGACAAATGAGTCGCAGAGAGATGCTAGAGTGCTGGAGTGGAGGCCCAATGGTGGGAAAATGCTTGCTGTGGGTTGCAAGGGTGGAATTTGCATGTGGGCTGCTTCTTATCCTGGAAATGCTGCATCTGTTAGATCTGGAGCTGCTTCCTTTTTAGGAGGTTTGTCTAGAAGCTCAGGGAATCGGTATATCCTGGTCGATTTTCTTCGTAGTCCATATGATGAGCATGTTAGTGCTCTAAGTTGGAGTCCAGATGGAAGATACTTAGCATCTGCTTCATATGAAAGCTCCTCGTTCACTGTATGGGATTTTGCTCAAGGTGTGGGAACACCCATTCGACGTGGATTAGGAGGCATATCTATGCTGAAGTGGTCACCTACTGGAGATTACTTCTTTGCTTCAAAATTTGATGGAACATTTTATCTTTGGGAAACAAACACATGGACATCAGAACAATGGTCATCAACTAGTGGTTTTGTCAAGGGTGCAACATGGGATCCAGATGGGCGTATGATACTTCTTGCATTTTCTGAATCGTCAACTTTGGGATCTATTCACTTTGCATCAAAGCCTCCGTCACTAGATGCACATTTGTTACCTGTTGATTTGCCAGAAATATTATCATTGACAGGCAGTCAGGGAATTGAAAAGATAGCATGGGATAATTCCGGGGAGCGATTGGCTGTGTCTTTTAAAGGTGGAGATGATATGTATAGGGGTCTGATCGCCATATATGATACAAGAAGAACTCCTCTTATATCTACATCATTAATTGGATTTATAAGAGGGCCTGGTGACAAGCCAAAACCAATCTCATTTTCATTTCACGGGAAGTTTAAGCAGGGACCATTGCTTTCTGTGTGCTGGAGTAGTGGGTTTTGTTGCACGTACCCCCTCTTATTTCGTTCTCATATGCTACCATAG 1347 0.4536 MASFPPPGSFTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHYLENDASDQEGPTATETAAGESVQRKSPVALLQGLVNNYLGRLFYPNDVHLLPEVDLQGVSWHPNKHIIAFISAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASYPGNAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALSWSPDGRYLASASYESSSFTVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSGFVKGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGIEKIAWDNSGERLAVSFKGGDDMYRGLIAIYDTRRTPLISTSLIGFIRGPGDKPKPISFSFHGKFKQGPLLSVCWSSGFCCTYPLLFRSHMLP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1050 448 SMART WD40_4 203 244 IPR001680 GO:0005515
Gso19g1050 448 SMART WD40_4 343 387 IPR001680 GO:0005515
Gso19g1050 448 SMART WD40_4 246 285 IPR001680 GO:0005515
Gso19g1050 448 SMART WD40_4 135 175 IPR001680 GO:0005515
Gso19g1050 448 PANTHER ALADIN/ADRACALIN/AAAS 1 447 IPR045139 -
Gso19g1050 448 Gene3D - 101 254 IPR015943 GO:0005515
Gso19g1050 448 Gene3D - 255 437 IPR015943 GO:0005515
Gso19g1050 448 Pfam WD domain, G-beta repeat 214 244 IPR001680 GO:0005515
Gso19g1050 448 SUPERFAMILY WD40 repeat-like 105 437 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1050 Gso-Chr19 38211999 38218333 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1050 K14320 - gmx:100808599 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1050 19 38211999 38218333 Gso3g1038 3 35108796 35115865 GST