Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1040 ATGCTCCTCCTTAGTCCTCAACCACCCTTCTTCACTTCCCTTCACATTGCAGAAGAGATGGCTCTTGTGAAACCAATTTCCAATGTCACTCCCAAATTTGGCAGCAGCCCCAGAATGGGATCACACTCCAAATTCAGCACCATAATAAGAATGTCTGCCACTGCCACCCCACCACCACCACCCTCCACCTCCACAAAGCCAGCTGCAAGCAACAAGAAGGGCAACATCAAGGAGACCCTCTTGACTCCAAGGTTCTACACCACTGACTTTGATGAGATGGAGACCCTCTTCAACACTGAGATCAACAAGAACCTCAACCAGGATGAGTTTGAGGCACTGCTCCAGGAGTTCAAGACTGACTACAACCAGACACACTTTGTGAGGAACAAGGAGTTCAAGGAAGCTGCTGACAAACTTGAGGGGCCACTCAGGCAGATCTTTGTGGAGTTCCTTGAGAGGTCCTGCACTGCTGAATTCTCTGGCTTCCTTCTCTACAAAGAGCTTGGAAGGAGGCTCAAGAAAACCAACCCCGTGGTGGCAGAGATTTTCTCTCTGATGTCTAGGGATGAAGCCAGGCATGCTGGGTTTTTGAACAAAGGTTTATCTGATTTTAATTTGGCTCTGGACTTGGGTTTCTTGACCAAAGCTAGAAAATACACATTTTTCAAGCCCAAGTTTATCTTCTATGCTACATACTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATATACAGACATCTCAAGGCCAACCCCGAGTTCCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAGGATGAGAACAGGCATGGAGATTTCTTCTCTGCCCTGATGAAGGCACAGCCACAATTTCTAAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGTCTATCGGTTTATGTTACAATGTATCTCAATGATTGCCAACGTACAGCTTTCTATGAAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACCCAGAGTTCAAGCGGAAGTTGGACCGGATGGTGGAGATAAACGAGAAGATTATTGCTGTTGGGGAGAGTGATGACATAGCGGTGGTGAAGAACTTGAAGAGGATCCCACTGGTTGCTGCATTGGTGTCTGAACTCTTGGCAACATATCTAATGCCTCCAATTGAGTCAGGGTCTGTAGATTTGGCAGAGTTTGAACCACAACTTGTGTACTGA 1275 0.4557 MLLLSPQPPFFTSLHIAEEMALVKPISNVTPKFGSSPRMGSHSKFSTIIRMSATATPPPPPSTSTKPAASNKKGNIKETLLTPRFYTTDFDEMETLFNTEINKNLNQDEFEALLQEFKTDYNQTHFVRNKEFKEAADKLEGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINEKIIAVGESDDIAVVKNLKRIPLVAALVSELLATYLMPPIESGSVDLAEFEPQLVY* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1040 424 Hamap Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [acsF]. 65 424 IPR008434 GO:0015979|GO:0015995|GO:0046872|GO:0048529
Gso19g1040 424 TIGRFAM AcsF: magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase 73 409 IPR008434 GO:0015979|GO:0015995|GO:0046872|GO:0048529
Gso19g1040 424 PANTHER MAGNESIUM-PROTOPORPHYRIN IX MONOMETHYL ESTER [OXIDATIVE] CYCLASE, CHLOROPLASTIC 13 424 IPR008434 GO:0015979|GO:0015995|GO:0046872|GO:0048529
Gso19g1040 424 SUPERFAMILY Ferritin-like 147 304 IPR009078 -
Gso19g1040 424 PANTHER S-ACYLTRANSFERASE 13 424 - -
Gso19g1040 424 CDD ACSF 79 408 IPR008434 GO:0015979|GO:0015995|GO:0046872|GO:0048529
Gso19g1040 424 MobiDBLite consensus disorder prediction 52 72 - -
Gso19g1040 424 Pfam Rubrerythrin 149 282 IPR003251 GO:0016491|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1040 Gso-Chr19 38081360 38084318 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1040 K04035 - gmx:100527925 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1040 19 38081360 38084318 Gso16g0452 16 5361275 5361825 GST