Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0962 ATGGATCTGGAGGGAATGGCTAAAATCTCCATCTTGTTGGTGGGGCTTTGGCTACTAGTTAACTGGTCAGGGTTGTTGGATGCAAAAAACATGAAGTACAAGAACCCTAAACACTCAACTGATACTCGGGTTGAGGATCTTGTTAGCAGGATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGGTTGAGCGCAAGTATGTATCTGCTGATTTACTTAAGAAGTATTTTATTGGGGCTGTATTGAGTGAGGGAGGGAGTATTCCAGCTCCACAGGCTTCTGCTGAAACCTGGATTGACATGGTGAATGAATTTCAGAAGGGTGCCTTATCAACCCGGCTCGGAATTCCAATGTTTTATGGGATTGATGCCGTTCATGGCCACAACACGGTTCACAACGCAACTATTTTTCCTCACAATATTGGCCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGTTTATTCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTTCAGTGAAGATCCTGAACTAGTTCAAGCTATGACTGAAATTATACCAGGATTGCAAGGGGACATCCCTAATGATTCACCAAAGGGTGTCCCTTTTATCACTGGAAAAGAAAAAGTTATAGGTTGTGCTAAGCACTACGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGCACAACACTGTTATAGATAGAGATGGATTGATGAAAATTCACATGCCAGGCTACTTCAGCTCAATCAGCAAGGGTGTGGCAACCATTATGGCCTCTTACTCCAGTTGGAATGGAGTAAAAATGCATGCTCACCATGATCTTATTACTGGCTTCCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTCTTGATAGGATCACCTCTCCACCTCGTGCAAATATCACTTATTCAATTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGGTTCCAAAGCATTACACAGAATTCATAGATGTTCTAACCATGTTGGTGAAAAATAAGCACATTCCCATGAGTCGAATTGATGATGCAGTGGGAAGAATTTTGTGGGTTAAGTTGATGATGGGTATTTTTGAGAACCCTTTTGCTGACTACAGTTTGGTCAAATATTTAGGAATCCAGGAACACAGAAATTTGGCTAGGGAAGCAGTAAGGAAATCAATGGTCCTTCTGAAAAATGGTGAATCTGCTGACAAGCCTTTATTGCCTCTTCCTAAAAAGTCGCCAAAAATACTTGTTGCGGGAAGCCATGCTGATAATCTAGGATATCAGTGTGGTGGCTGGACCATAGAATGGCAAGGAGTTAGTGGAAACAATCTTCTCAAAGGGACTACAATTCTCACTGCTGTGAAAAACACTGTTGATCCTGAAACCACAGTGGTCTACAAGGAGAACCCTGATGTAGAGTTTGTCAAATCCAATGGATTTTCCTATGCCATAGTTATAGTAGGGGAGCACCCTTATGCTGAAATGTATGGTGACAGCATGAACTTGACAATCCCAGAACCTGGTCCTAAGATCATAACAAATGTCTGTGGAGCAATAAAATGCGTGGTTATCATTATTTCTGGTCGTCCTGTAGTTATTGAACCATATGTTGGTTTAATAGATGCACTTGTTGCTGCATGGCTCCCAGGTAGCGAAGGCCAAGGTGTGGCTGATGTTTTATATGGCGGCTATGGTTTCACTGGAAAGCTTCCAAGGACATGGTTCAAAACTGTTGATCAACTGCCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCAAACCTTCTAAGGCCCTTTATTCCTCTTGA 1911 0.426 MDLEGMAKISILLVGLWLLVNWSGLLDAKNMKYKNPKHSTDTRVEDLVSRMTLEEKIGQMLQVERKYVSADLLKKYFIGAVLSEGGSIPAPQASAETWIDMVNEFQKGALSTRLGIPMFYGIDAVHGHNTVHNATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYVYSPCIAVCRDPRWGRCYESFSEDPELVQAMTEIIPGLQGDIPNDSPKGVPFITGKEKVIGCAKHYVGDGGTINGIDEHNTVIDRDGLMKIHMPGYFSSISKGVATIMASYSSWNGVKMHAHHDLITGFLKNTLHFKGFVISDFEGLDRITSPPRANITYSIEAGVSAGIDMFMVPKHYTEFIDVLTMLVKNKHIPMSRIDDAVGRILWVKLMMGIFENPFADYSLVKYLGIQEHRNLAREAVRKSMVLLKNGESADKPLLPLPKKSPKILVAGSHADNLGYQCGGWTIEWQGVSGNNLLKGTTILTAVKNTVDPETTVVYKENPDVEFVKSNGFSYAIVIVGEHPYAEMYGDSMNLTIPEPGPKIITNVCGAIKCVVIIISGRPVVIEPYVGLIDALVAAWLPGSEGQGVADVLYGGYGFTGKLPRTWFKTVDQLPMNVGDPHYDPLFPFGFGLSTKPSKALYSS* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0962 636 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 417 626 IPR036881 GO:0004553|GO:0005975
Gso19g0962 636 Pfam Glycosyl hydrolase family 3 N terminal domain 52 378 IPR001764 GO:0004553|GO:0005975
Gso19g0962 636 Pfam Glycosyl hydrolase family 3 C-terminal domain 417 626 IPR002772 GO:0004553|GO:0005975
Gso19g0962 636 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 10 636 - -
Gso19g0962 636 SUPERFAMILY (Trans)glycosidases 31 416 IPR017853 -
Gso19g0962 636 PRINTS Glycosyl hydrolase family 3 signature 113 129 IPR001764 GO:0004553|GO:0005975
Gso19g0962 636 PRINTS Glycosyl hydrolase family 3 signature 137 156 IPR001764 GO:0004553|GO:0005975
Gso19g0962 636 PRINTS Glycosyl hydrolase family 3 signature 183 199 IPR001764 GO:0004553|GO:0005975
Gso19g0962 636 PRINTS Glycosyl hydrolase family 3 signature 229 245 IPR001764 GO:0004553|GO:0005975
Gso19g0962 636 PRINTS Glycosyl hydrolase family 3 signature 299 317 IPR001764 GO:0004553|GO:0005975
Gso19g0962 636 Gene3D - 402 628 IPR036881 GO:0004553|GO:0005975
Gso19g0962 636 PANTHER BETA-D-GLUCOSIDE GLUCOHYDROLASE 10 636 - -
Gso19g0962 636 Gene3D - 26 401 IPR036962 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0962 Gso-Chr19 36766630 36770610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0962 31 631 Glycoside Hydrolase AT5G20950 70.383 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0962 K05349 - gmx:100800077 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0962 19 36766630 36770610 Gso16g0320 16 3650016 3654167 GST