Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0945 ATGGCTGAACAAGCATTGGAAGGTAGCCAACCTGTGGATTTAACAAAGCACCCTTCTGGGATTGTGCCTACCCTTCAAAATATTGTGTCAACGGTCAATTTGGACTGTAAATTGGAGCTTAAATCAATTGCACTTCAAGCTCGAAATGCAGAATACAATCCCAAGCGTTTTGCTGCTGTTATTATGAGGATCAGGGAACCAAAAACTACTGCACTCATTTTTGCATCTGGCAAGATGGTCTGCACTGGAGCTAAGAGTGAGCAACAGTCTAAATTGGCGGCAAGGAAGTATGCTAGAATTATCCAAAAGCTTGGTTTCCCAGCTAAATTTAAGGATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATAGTGCTTTCTCAAGTTATGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCCGGAAAAATTGTTCTGACAGGAGCCAAGGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGA 603 0.4163 MAEQALEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0945 200 Gene3D - 26 194 IPR012295 -
Gso19g0945 200 Gene3D - 30 115 IPR012295 -
Gso19g0945 200 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 PRINTS Transcription initiation factor TFIID signature 68 86 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 PRINTS Transcription initiation factor TFIID signature 115 131 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 PRINTS Transcription initiation factor TFIID signature 139 154 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 PRINTS Transcription initiation factor TFIID signature 158 174 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 PANTHER TATA-BOX-BINDING PROTEIN 1 1 200 - -
Gso19g0945 200 PANTHER TATA-BOX BINDING PROTEIN 1 200 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 Hamap TATA-box-binding protein [tbp]. 19 198 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 112 195 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 104 IPR000814 GO:0003677|GO:0006352
Gso19g0945 200 CDD TBP_eukaryotes 22 195 IPR033710 GO:0003677|GO:0006352
Gso19g0945 200 ProSitePatterns Transcription factor TFIID repeat signature. 143 192 IPR030491 -
Gso19g0945 200 SUPERFAMILY TATA-box binding protein-like 21 114 - -
Gso19g0945 200 SUPERFAMILY TATA-box binding protein-like 112 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0945 Gso-Chr19 36531226 36535934 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0945 K03120 - gmx:100790566 393.275