Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0906 ATGGGAATGAAGAAGGTAGCGTCGGGTGTGACGATGGATCACGTGCTGCTGGCGTCGCAGGAGACGAAGGAGGCACGTGAGGCTCGGATTCGGAGCCTCTTCGATTTCTTCGACAGAGAGAATCTCGGGTTCTTGGACTACTCTCACATTGAGGCCGGTCTCTCGGCGCTCCAGATTCCGGCTGAGTATAAGTACGCGAAGGATTTGCTGAACGCCTGCGATGCCAACAAGGATGGGAGAGTGGATTTCCAGGAGTTCAGGAAGTACATGGACGACAAGGAACTGGAGCTTTACCGCATTTTTCAGGCCATCGATGTCGCGCACAATGGCTGCATTTTGCCCGAGGAGCTCTGGGAGGCGCTTGTTAGAGCAGGTATTAAGATTGATGACGAGGAACTCGCTCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTCAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAAGCAACCATAGAGAACATTTACCATTATTTGGAGCGGATGTGTATGGTTGATATCGGGGAGCAGACTGTTATTCCAGCAGGCATTGGTAAGCACATTCATGCAAGCAGGTATCTGATTGCAGGGGGAGTAGCAGGTGCAGCATCACGCACAGCAACTGCACCCCTTGACCGTCTAAAGGTTGTATTGCAAGTCCAAACAACGCGAGCTCAAATAATGCCTGCAATAAAAGATATATGGAAGGAGGGTGGTTTGTTAGGATTTTTTCGAGGCAATGGCTTAAATGTTCTTAAGGTGGCCCCTGAGAGTGCCATTAGATTTTATAGCTATGAGATGCTGAAGACCTTCATTGTGCGTGCCAAAGGGGAAGAGGCAAAGGCTGCTGATATTGGAGCTATGGGGCGGCTACTAGCTGGTGGTATTGCTGGTGCTGTAGCTCAAACTGCAATATATCCCATGGATCTTGTTAAAACACGACTACAAACCTATGCTTGTAAAAGTGGAAGAATTCCTAGCCTTGGAACCCTTTCAAAAGATATATGGGTTCAGGAAGGACCCCGGGCATTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATTATCCCTTATGCTGGCATAGATCTTGCTGCGTATGAAACCTTGAAGGATATGTCCAAGCAATATATTCTTCATGATGGAGAACCTGGCCCTCTAGTACAATTAGGATGTGGGACTGTATCTGGAGCTCTTGGAGCAACATGTGTTTACCCACTGCAGGTGGTTAGAACAAGAATGCAGGCTCAACGCTCATACAAGGGAATGGCTGATGTATTCAGGAAAACCCTTGAACATGAAGGCTTGAGGGGATTCTACAAAGGAATATTTCCTAACTTGCTCAAAGTTGTACCGTCAGCAAGCATCACCTACATGGTTTATGAGTCTATGAAAAAAAATTTGGATTTGGAGTGA 1434 0.4658 MGMKKVASGVTMDHVLLASQETKEAREARIRSLFDFFDRENLGFLDYSHIEAGLSALQIPAEYKYAKDLLNACDANKDGRVDFQEFRKYMDDKELELYRIFQAIDVAHNGCILPEELWEALVRAGIKIDDEELARFVERVDKDNNGVITFQEWRDFLLLYPHEATIENIYHYLERMCMVDIGEQTVIPAGIGKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRAQIMPAIKDIWKEGGLLGFFRGNGLNVLKVAPESAIRFYSYEMLKTFIVRAKGEEAKAADIGAMGRLLAGGIAGAVAQTAIYPMDLVKTRLQTYACKSGRIPSLGTLSKDIWVQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSKQYILHDGEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSYKGMADVFRKTLEHEGLRGFYKGIFPNLLKVVPSASITYMVYESMKKNLDLE* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0906 477 Pfam EF hand 67 88 IPR002048 GO:0005509
Gso19g0906 477 ProSiteProfiles EF-hand calcium-binding domain profile. 97 127 IPR002048 GO:0005509
Gso19g0906 477 ProSitePatterns EF-hand calcium-binding domain. 74 86 IPR018247 -
Gso19g0906 477 SUPERFAMILY Mitochondrial carrier 193 468 IPR023395 -
Gso19g0906 477 ProSiteProfiles EF-hand calcium-binding domain profile. 128 163 IPR002048 GO:0005509
Gso19g0906 477 Gene3D Mitochondrial carrier domain 191 475 IPR023395 -
Gso19g0906 477 ProSiteProfiles EF-hand calcium-binding domain profile. 25 60 IPR002048 GO:0005509
Gso19g0906 477 Gene3D - 2 96 - -
Gso19g0906 477 ProSiteProfiles Solute carrier (Solcar) repeat profile. 195 278 IPR018108 -
Gso19g0906 477 SUPERFAMILY EF-hand 20 188 IPR011992 -
Gso19g0906 477 PANTHER SOLUTE CARRIER FAMILY 25 44 474 - -
Gso19g0906 477 PRINTS Mitochondrial carrier protein signature 200 213 IPR002067 GO:0055085
Gso19g0906 477 PRINTS Mitochondrial carrier protein signature 213 227 IPR002067 GO:0055085
Gso19g0906 477 PRINTS Mitochondrial carrier protein signature 253 273 IPR002067 GO:0055085
Gso19g0906 477 PRINTS Mitochondrial carrier protein signature 307 325 IPR002067 GO:0055085
Gso19g0906 477 PRINTS Mitochondrial carrier protein signature 352 370 IPR002067 GO:0055085
Gso19g0906 477 PRINTS Mitochondrial carrier protein signature 399 421 IPR002067 GO:0055085
Gso19g0906 477 ProSitePatterns EF-hand calcium-binding domain. 141 153 IPR018247 -
Gso19g0906 477 ProSiteProfiles Solute carrier (Solcar) repeat profile. 292 379 IPR018108 -
Gso19g0906 477 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 44 474 - -
Gso19g0906 477 SMART efh_1 132 160 IPR002048 GO:0005509
Gso19g0906 477 SMART efh_1 29 57 IPR002048 GO:0005509
Gso19g0906 477 SMART efh_1 96 124 IPR002048 GO:0005509
Gso19g0906 477 SMART efh_1 65 93 IPR002048 GO:0005509
Gso19g0906 477 ProSiteProfiles Solute carrier (Solcar) repeat profile. 390 473 IPR018108 -
Gso19g0906 477 Pfam EF-hand domain pair 96 154 IPR002048 GO:0005509
Gso19g0906 477 Gene3D - 108 183 - -
Gso19g0906 477 Pfam Mitochondrial carrier protein 292 380 IPR018108 -
Gso19g0906 477 Pfam Mitochondrial carrier protein 391 474 IPR018108 -
Gso19g0906 477 Pfam Mitochondrial carrier protein 194 281 IPR018108 -
Gso19g0906 477 ProSiteProfiles EF-hand calcium-binding domain profile. 61 96 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0906 Gso-Chr19 35578877 35582712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0906 10 477 EF-hand Containing Proteins AT5G51050 72.921 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0906 K14684 - gmx:100775805 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0906 19 35578877 35582712 Gso16g0385 16 4382620 4389120 GST
Gso19g0906 19 35578877 35582712 Gso19g0906 19 35578877 35582712 PCT
Gso16g0385 16 4382620 4389120 Gso19g0906 19 35578877 35582712 PCT
Gso19g0906 19 35578877 35582712 Gso16g0385 16 4382620 4389120 PCT