Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0788 ATGTTGGCGCCAAAATTGCAACCCTTTAAACCACCGCCGCTGCAAAGAACCCTCGCCACTCTGGCACTCATATCCGACAAATGCACAACCCTAGACCAGCTGAAGCAGGTCCATGCCCAGATGATCGTCTCCGCCGTCGTCGCCACCGACCCCTTCGCCGCGAGCCGCCTGTTCTTCTCGTGCGCCCTCTCCCCCTTCGGCGACCTCTCCCTCGCTTTCAGAATCTTCCACTCCACCCCGCGTCCCAACTCCTTCATGTGGAACACCCTCATCCGCGCCCAAACCCACGCGCCCCACGCGCTCTCCCTCTACGTAGCCATGCGCCGAAGCAACGTCCTCCCCGGCAAGCACACCTTCCCCTTCCTCCTCAAGGCATGCGCTCGTGTGCGCTCGTTCACAGCTTCCCAACAGGTCCATGTACATGTCATCAAGTTCGGGTTGGACTTTGATTCCCACGTGGTTGATGCATTGGTTCGATGTTACTCTGTTTCGGGACACTGCGTCAGTGCCCGTCAAGTGTTTGATGAAACGCCTGAGAAAATTTCGAGTCTTTGGACCACTATGGTTTGTGGGTATGCCCAGAATTTCTGCTCCAACGAGGCTTTGAGGCTGTTTGAGGATATGGTTGGGGAGGGCTTTGAGCCCGGTGGGGCCACCCTGGCGTCAGTGTTGTCCGCATGTGCCCGGTCGGGTTGTCTTGAGCTTGGGGAAAGGATTCATGAGTTTATGAAGGTGAAAGGGGTTGGACTTGGAGAGGGAGTGATACTCGGGACAGCGTTGGTTTACATGTATGCGAAGAATGGGGAGATTGCGATGGCGCGGAGGTTGTTCGATGAAATGCCAGAGAGGAATGTTGTTACTTGGAATGCTATGATCTGTGGGTTGGGTGCTTATGGATATGTGGATGATGCGCTTGGTTTGTTTGAGAAGATGAAGAAAGAGGGGGTTGTTGTTCCCAATGGTGTCACCTTTGTTGGAGTTTTATCGGCTTGTTGTCATGCTGGCTTGATTGATGTTGGTCGTGAGATTTTTCGGTCAATGAAGTCGGTGTATGGAATTGAGCCGAAGATTGAGCATTATGGGTGCTTGGTTGATCTTCTTGGGAGAGGGGGTTGGTTGTTAGAGGCGGTGGAGCTGGTGAAAGGAATGCCGTGGAAAGCTGATGTGGTTATTTTGGGAACTTTGTTGGCAGCTAGCAGGATTAGTGGAAATACTGAGGTTGCTGAAAGAGTGGTGAAGGATATTCTTGCTCTGGAACCTCAGAATCATGGTGTTCATGTTGCTTTGTCTAATATGTATGCAGAGGCTGGACAGTGGCAGGAAGTTTTGAGACTGAGGAAGACAATGAAAGAAGAGAGACTCAAGAAGGCTCCAGGGTGGAGCCTTGTTGCCACTTAG 1398 0.5236 MLAPKLQPFKPPPLQRTLATLALISDKCTTLDQLKQVHAQMIVSAVVATDPFAASRLFFSCALSPFGDLSLAFRIFHSTPRPNSFMWNTLIRAQTHAPHALSLYVAMRRSNVLPGKHTFPFLLKACARVRSFTASQQVHVHVIKFGLDFDSHVVDALVRCYSVSGHCVSARQVFDETPEKISSLWTTMVCGYAQNFCSNEALRLFEDMVGEGFEPGGATLASVLSACARSGCLELGERIHEFMKVKGVGLGEGVILGTALVYMYAKNGEIAMARRLFDEMPERNVVTWNAMICGLGAYGYVDDALGLFEKMKKEGVVVPNGVTFVGVLSACCHAGLIDVGREIFRSMKSVYGIEPKIEHYGCLVDLLGRGGWLLEAVELVKGMPWKADVVILGTLLAASRISGNTEVAERVVKDILALEPQNHGVHVALSNMYAEAGQWQEVLRLRKTMKEERLKKAPGWSLVAT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0788 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Gso19g0788 465 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 16 464 - -
Gso19g0788 465 Pfam E motif 404 463 IPR046848 -
Gso19g0788 465 Gene3D Tetratricopeptide repeat domain 94 256 IPR011990 GO:0005515
Gso19g0788 465 Gene3D Tetratricopeptide repeat domain 262 460 IPR011990 GO:0005515
Gso19g0788 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Gso19g0788 465 TIGRFAM PPR: pentatricopeptide repeat domain 184 215 IPR002885 -
Gso19g0788 465 TIGRFAM PPR: pentatricopeptide repeat domain 258 286 IPR002885 -
Gso19g0788 465 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Gso19g0788 465 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Gso19g0788 465 Pfam PPR repeat 222 248 IPR002885 -
Gso19g0788 465 Pfam PPR repeat 359 384 IPR002885 -
Gso19g0788 465 Pfam PPR repeat 184 213 IPR002885 -
Gso19g0788 465 Pfam PPR repeat family 283 333 IPR002885 -
Gso19g0788 465 PANTHER OS11G0483950 PROTEIN 16 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0788 Gso-Chr19 32312454 32314604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0788 20 463 Glycoside Hydrolase AT3G49170 33.186 3.40e-72 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0788 - - gmx:113000421 923.309