Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0175 ATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCTACTCACCCACTGGAGTTGCTATAACATCCTCGGGGACCAAGAAAGGTGACCTTTTTGTGGCGGATGTTAACACCCAGTTGAAGAACAAGAACATCACCACTGATATCAAAGTGGACACCGGTTCCAATCTTTTCACAACTATCACTGTCAATGAGCCTGCTCCTGGTCTCAAGACTATTTTTAGCTTTAGAGTTCCTGATCAAAGGTCTGGAAAGGTGGAAGTCCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTGGGTTTAACAGCAAACCCAATTGTCAACTTCTCCGGCGTTGTAGGAACTAATGTACTTGCCCTTGGTACTGATGTTTCTTTTGACACCAAGATTGGGGAGTTAACTAAATTCAATGCTGGATTGAACTTCACCAAAGATGATTTGGTTGCCTCATTGACTGTGAATAACAAAGGTGATTCCCTGAATGCTTCATACTACCATACAGTCAATCGCTTGACCAACACAGCTGTTGGTGCTGAGGTAACTCACCAATTCTCAACCAATGAGAACACCCTCACACTTGGCACCCAGCATGCATTGGATCCATTGACGACTGTGAAGGCTCGTGTCAACAACTTGGGCAAGGCAAATGCTCTCATCCAGCACGAGTGGCGTCCCAGATCGTTCTTCACCATTTCTGGGGAGGTTGACACTAAGGCCATTGAGAAGAGTGCAAAGGTTGGATTAGGTTTGGCCCTCAAACCCTAA 831 0.4585 MSKGPGLYSDIGKKARDLLFKDYHSDQKFTITTYSPTGVAITSSGTKKGDLFVADVNTQLKNKNITTDIKVDTGSNLFTTITVNEPAPGLKTIFSFRVPDQRSGKVEVQYLHDYAGISTSVGLTANPIVNFSGVVGTNVLALGTDVSFDTKIGELTKFNAGLNFTKDDLVASLTVNNKGDSLNASYYHTVNRLTNTAVGAEVTHQFSTNENTLTLGTQHALDPLTTVKARVNNLGKANALIQHEWRPRSFFTISGEVDTKAIEKSAKVGLGLALKP* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0175 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741|GO:0055085
Gso19g0175 276 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 276 - -
Gso19g0175 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
Gso19g0175 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741|GO:0008308|GO:0098656
Gso19g0175 276 Gene3D Porin 1 275 IPR023614 -
Gso19g0175 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741|GO:0008308|GO:0098656
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0175 Gso-Chr19 2150864 2153836 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0175 K15040 - gmx:100170756 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0175 19 2150864 2153836 Gso6g1602 6 16744733 16747456 ECH
Gso19g0175 19 2150864 2153836 Gso19g0175 19 2150864 2153836 ECH