Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1880 ATGGCCATGGAAAATCAAAATTTTCTAGAGTATTGGGTTTTGCCACTACTTATGATGCTTTTGTTGGGTCATTGGATCTCTGTTCAAGCTGCCCCTTCACCCTCTCTCATCACTCAACTCCCTGGCTTTAACGCCAATTTCCCATCCAAGCACTATTCCGGGTATATAAGTATTGATGGAAATGCTGAAAGTGGGAAGAACCTGTTCTACTACTTTGTTAGTTCAGAAAGTAGTCCAGAGAAGGACCCAGTTGTGCTATGGCTGAATGGTGGACCTGGGTGCTCCAGCTTTGATGGCTTTGTTTACGAGCATGGACCATTCAACTTTGAGGCTGCAAATTCAAAAGGGAATCTACCCACTTTGCATATCAATCCTTACAGCTGGTCTAAGGTTTCCAACATTATATATTTGGATTCCCCTGCTGGTGTTGGGCTCTCTTACTCCAAGAACACAAGCAAATATGCCACTGGGGATCTAGAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGTGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTATGCCGGAGTTTATGTGCCTACTCTTGCTTTTGAAGTTGCTAAAGGAATCCGGAGTGGTACAAAGCCCGTGATCAATTTTAAGGGTTACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTCTTATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGAATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCCCCAATGCTGCCACAGCCAAAGAAAATGGAACCTTACCAAGGAGTTTCAAGCAATTAGGAGTTACTGAGAGGCCTCTCCCAGTGAGAAAGAGAATGTTTGGTAGAGCTTGGCCTTTTAGAGCACCAGTCAAACCTGGTCTTGTTACATTATGGCCCCAGTTGGCTCAAACTAGGCACGTCGCATGTGTTAGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCACAATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGTGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGATCTTTGGGTTACAAGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTTACAGCCGTTGGTTGGAAGGGAAGCTAATATAA 1521 0.4484 MAMENQNFLEYWVLPLLMMLLLGHWISVQAAPSPSLITQLPGFNANFPSKHYSGYISIDGNAESGKNLFYYFVSSESSPEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAANSKGNLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNTSKYATGDLETASDTHVFLLKWFQQFPEFQANPFYIAGESYAGVYVPTLAFEVAKGIRSGTKPVINFKGYMVGNGVTDEIFDGNALIPFVHGMGLISDSIYENLQSSCKGNYYDAYSLDENDVCYKTIEKVDRAIDGLNVYNILEPCYHFPNAATAKENGTLPRSFKQLGVTERPLPVRKRMFGRAWPFRAPVKPGLVTLWPQLAQTRHVACVSDEVASSWLNNVAVRKAIHAESEKVAGPWELCSSRIEYHHNAGSMIPYHKNLTRLGYRALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWNSNNQVAGYLQAYENNLTFLTIKGAGHTVPEYKPREALDFYSRWLEGKLI* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1880 506 ProSitePatterns Serine carboxypeptidases, histidine active site. 473 490 IPR033124 GO:0004185
Gso18g1880 506 Pfam Serine carboxypeptidase 41 503 IPR001563 GO:0004185|GO:0006508
Gso18g1880 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 20 505 IPR001563 GO:0004185|GO:0006508
Gso18g1880 506 PANTHER CARBOXYPEPTIDASE 20 505 - -
Gso18g1880 506 Gene3D alpha/beta hydrolase 30 325 IPR029058 -
Gso18g1880 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Gso18g1880 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Gso18g1880 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Gso18g1880 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 473 486 IPR001563 GO:0004185|GO:0006508
Gso18g1880 506 Gene3D - 408 503 - -
Gso18g1880 506 SUPERFAMILY alpha/beta-Hydrolases 37 504 IPR029058 -
Gso18g1880 506 ProSitePatterns Serine carboxypeptidases, serine active site. 186 193 IPR018202 GO:0004185
Gso18g1880 506 Gene3D - 362 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1880 Gso-Chr18 51257142 51263164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1880 367 504 Calmodulin-binding Proteins AT2G22960 50.000 1.25e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1880 K16296 - gmx:100790895 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1880 18 51257142 51263164 Gso9g2054 9 44923027 44928445 GST
Gso18g1880 18 51257142 51263164 Gso7g0552 7 5595035 5597663 PCT
Gso18g1880 18 51257142 51263164 Gso16g0250 16 2896627 2899224 PCT