Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1678 ATGCAGAGATTCCATCTGGGTCTCCCTCATTCACCACCAATGGACACCAGCACACCCTTCCAAGACCTTCCAGAAGCATCTCCAAAGCCCTTCTTCAAGAAAACCACACTCACTTCCTTCATCATGTCTTCAACACCTTCCTTCAAGGAAGACACCTACTACATCTCCCACCTCAAATCCTCCGAGAAAAAAGCCCTCCAAGACCTCAAGAACAAACTCCAATCTTCTTATTCTTCCACCCCTTCCATGTGGGGCGTTCCTTTACTCAACAACAACAACGCCGACAACGCCGACGTCATCCTCCTCAAGTTCCTCCGAGCCCGTGACTTCAGGGTCCACGACGCCCTCTCCATGCTCCTCAAGTGCCTCTCATGGAGGACCGAGTTCGGAGCTGACAACATTGTCGACGAGGAGCTCGGTGGGTTCAAGGAACTTGAAGGGGTTGTAGCCTATACCCATGGCTATGACAGAGAGGGACACCCCGTGTGCTACAACGCCTATGGGGTATTCAAGGATAGGGAGATGTACGAGAATGTTTTCGGGGACGAGGAGAAGCTGAAGAAGTTCTTGCGGTGGAGGGTGCAGGTGCTGGAGAGAGGGGTGAGGATGCTACACTTCAAGCCCGGTGGGGTTAATTCGCTCATTCAGGTTACGGACCTTAAAGACATGCCCAAGAGGGAGCTAAGAATTGCTTCTAACCAGATTCTGTCTCTGTTCCAGGATAACTATCCTGAAATGGTGGCTCGCAAGATTTTCATCAATGTGCCATGGTACTTCAGTGTGTTGTATTCAATGTTCAGTCCGTTTCTGACCCAGAGAACTAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCTGCCGAGACACTCTACAAATTTATAAGGCCCGAGAATATTCCTGTTCGGTATGGTGGATTGAGTCGACCAAGCGATTTGGAGAATGGTCCCCCAAAACCTGCTTCTGAGTTCACAGTTAAAGGAGGAGAGATAGTGAACATACAAATAGAAGGAATTGAGAGTGGTGCAACTATCACTTGGGATATTGTGGTGGGAGGTTGGGACTTGGAGTATAGTGCTGAATTTGTCCCAATTGCACAAGGTAGCTACACCTTAGCAGTTGATAAGGCAAGGAAGATTGAGGCCACAGAAGAAGCAATCCATAACTCTTTCACATCAAAAGAAGCTGGCAAAATGGTACTCTCTGTTGATAACTCTGCCTCAAGGAAGAAAAAAGTTGCTGCTTATCGCTATTTTGTGCGCAAATCCAGCACACCAACACCATCTGAGGTGCAATTAAGCCCTAAATGA 1308 0.4794 MQRFHLGLPHSPPMDTSTPFQDLPEASPKPFFKKTTLTSFIMSSTPSFKEDTYYISHLKSSEKKALQDLKNKLQSSYSSTPSMWGVPLLNNNNADNADVILLKFLRARDFRVHDALSMLLKCLSWRTEFGADNIVDEELGGFKELEGVVAYTHGYDREGHPVCYNAYGVFKDREMYENVFGDEEKLKKFLRWRVQVLERGVRMLHFKPGGVNSLIQVTDLKDMPKRELRIASNQILSLFQDNYPEMVARKIFINVPWYFSVLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPENIPVRYGGLSRPSDLENGPPKPASEFTVKGGEIVNIQIEGIESGATITWDIVVGGWDLEYSAEFVPIAQGSYTLAVDKARKIEATEEAIHNSFTSKEAGKMVLSVDNSASRKKKVAAYRYFVRKSSTPTPSEVQLSPK* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1678 435 SMART sec14_4 144 308 IPR001251 -
Gso18g1678 435 Pfam CRAL/TRIO, N-terminal domain 65 120 IPR011074 -
Gso18g1678 435 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 322 430 IPR036598 -
Gso18g1678 435 PANTHER PATELLIN-1 14 422 IPR044834 GO:0008289
Gso18g1678 435 PANTHER PATELLIN-6 14 422 - -
Gso18g1678 435 ProSiteProfiles GOLD domain profile. 287 421 IPR009038 -
Gso18g1678 435 Gene3D - 53 324 IPR036865 -
Gso18g1678 435 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 153 311 IPR001251 -
Gso18g1678 435 Pfam CRAL/TRIO domain 146 305 IPR001251 -
Gso18g1678 435 Gene3D GOLD domain 325 419 - -
Gso18g1678 435 SUPERFAMILY CRAL/TRIO domain 144 308 IPR036865 -
Gso18g1678 435 CDD SEC14 142 306 IPR001251 -
Gso18g1678 435 MobiDBLite consensus disorder prediction 1 22 - -
Gso18g1678 435 SMART CRAL_TRIO_N_2 97 122 IPR011074 -
Gso18g1678 435 SUPERFAMILY CRAL/TRIO N-terminal domain 47 138 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1678 Gso-Chr18 48890203 48894091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1678 101 315 Acyl Lipid Metabolism Gene Families AT1G55840 27.632 1.10e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1678 - - gmx:100814996 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1678 18 48890203 48894091 Gso1g1085 1 44421871 44424875 PCT
Gso1g1085 1 44421871 44424875 Gso18g1678 18 48890203 48894091 PCT