Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1664 ATGTCTCGAAGATATGATAGCCGTACTACAATCTTCTCCCCTGAAGGACGTCTTTACCAAGTGGAATATGCTATGGAGGCCATTGGGAATGCTGGTACTGCAATAGGGATCTTGTCAAAAGATGGGGTAGTTCTGGTTGGTGAGAAGAAAGTCACATCCAAGCTGCTGCAAACCTCAACTTCCACCGAGAAAATGTACAAGATTGATGATCATGTTGCATGTGCCGTGGCTGGAATTATGTCTGATGCTAACATCCTAATCAATACTGCTAGAGTTCAGGCACAGCGCTACACGTATGCTTACCAAGAGCCAATGCCGGTTGAGCAGTTGGTTCAATCTCTTTGTGACACTAAGCAAGGTTACACACAATTTGGTGGTCTTCGTCCATTTGGAGTCTCGTTCCTCTTTGCTGGCTGGGACAAGAATTTTGGCTTTCAACTTTACACTAGTGACCCCAGTGGAAATTATGGCGGTTGGAAAGCTGCAGCTATTGGTGCCAACAACCAGGCAGCACAGTCAATTCTGAAACAGGACTACAAGGATGATATCACAAGGGAAGAAGCAGTTCAACTTGCACTGAAGGTGCTAAGTAAAACTATGGACAGCACAAGTCTTACCTCTGAAAAGCTTGAACTTGCAGAGGTATTTCTCTCACCCTCTGGAAAAGTCAAGTATCAAGTTTGCTCCCCAGAAAACCTGACTAAGCTGTTGGTGAAGTTTGGGGTGACTCAACCGGCAACAGACACTGCTTAG 753 0.4542 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYTSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDITREEAVQLALKVLSKTMDSTSLTSEKLELAEVFLSPSGKVKYQVCSPENLTKLLVKFGVTQPATDTA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1664 250 CDD proteasome_alpha_type_4 3 215 - -
Gso18g1664 250 ProSiteProfiles Proteasome alpha-type subunit profile. 20 237 IPR023332 -
Gso18g1664 250 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 249 IPR029055 -
Gso18g1664 250 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 249 - -
Gso18g1664 250 Pfam Proteasome subunit 30 214 IPR001353 GO:0005839|GO:0051603
Gso18g1664 250 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 236 IPR029055 -
Gso18g1664 250 Pfam Proteasome subunit A N-terminal signature 5 27 IPR000426 GO:0006511|GO:0019773
Gso18g1664 250 ProSitePatterns Proteasome alpha-type subunits signature. 5 27 IPR000426 GO:0006511|GO:0019773
Gso18g1664 250 PANTHER PROTEASOME SUBUNIT ALPHA TYPE-4-A 1 249 IPR034647 GO:0019773
Gso18g1664 250 SMART Proteasome_A_N_2 5 27 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1664 Gso-Chr18 48632984 48636360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1664 K02728 - gmx:100786457 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1664 18 48632984 48636360 Gso7g1322 7 19250061 19253092 GST
Gso18g1664 18 48632984 48636360 Gso1g1059 1 43554543 43558444 PCT
Gso1g1059 1 43554543 43558444 Gso18g1664 18 48632984 48636360 PCT