Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0736 ATGAGTTTCGTGCCAAAGGAGACAATCGAAGTCATTGCACAGAGCATCGGCATCACCAATTTGTCCTCCGATGTTGCCCTCTCTCTCGCTCCCGATCTCGAATATCGCATTCGCGAAATCATGCAGGAGTCGGTAAAATGCATGCGCCATTCAAAGAGAACTTTTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAGCCAATATATGGGTTCACATCTAATGATCCTCCACGATTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGACGACAAAGATGTGGATATCAAAGATATTGTTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACTAGTCACTGGTTGGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAGCTCCGTCTGAGATAAGAAAATCTGAATTTAAGGAAGACGGGCTTCCTGTTGATGTTAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAGCTTTACTACGAGAAAATAACTGACCTAACTTTAAAGAAGCCTGGATCCATTCCTTTTAGAAGAGCATTGGTTAGCTTGTCAGCAGACTCGGGACTCCATCCCTTAGTTCCTTATTTCACATTTTTTGTTGCTGATGAGGTGGCACGGAATTTAAATAATTTAGCTGTTTTATTTGCCTTGATGCGCCTTGTGCGGAGCCTTCTGCAAAATTCTCAGATACACATAGAACTTTATTTACATCAATTGATGCCGCCTATCATTACTTGCATTGTTGCAAAAAGGATAGGAAACAGACTCTCTGATGAGCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTACTTCAATATGCCAAAGATTTGGGCATATTTATCACAATCTGCAGCCACGTGTGATGAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTTTGCCTCAACACTATGGTGCAATTAAAGGGATAGAAGCTCTTGGATCAAGACTGATTCGCTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACCTGAGAAGCAAGAAAACGAAATGAAGAGGCATGAAGCTTGGCAAGTTTATGGGGCTTTGTTGGGTGCAGCAGGACAATGCGTGCATGAAAAGGTCAAAACGTTTGGCAATTTGTTCTCTCCTCCAACTCAGGTTACTTCAAGAGGCAGTGGAAAATCTGTGATTGCGATGCCAGGCAAACGAAAAGCCAGCACCGTTAATCTGATGCAGCAGCAGCAGCTACCTCCAATGAAGAAACTTGTAACAGACGGCACTGGAGGCGCGGTACCAATGAACTCCATGTCAGTTGACATGCAAGGTTCAACAGGTGGATATTCTTCCATGATGGGGGTTTCTTCCATGTCAATGGCTCGTCAAATATCCAATGACAACGTGCCTGGGAGGGATATTGGAGATCAACAAAGGAAGGTGTCCTCCACTCTTGCTCAGGCTTGGAAGGATGATATTGATGCAGGAAATTTGGTGTCATCAGTGGTTGAATTATTTGGGGAAAGTGTGTTGCCGTTTGTTCCAAACCCTGAAGCATACATGTTTTTGTAG 1614 0.4281 MSFVPKETIEVIAQSIGITNLSSDVALSLAPDLEYRIREIMQESVKCMRHSKRTFLTTEDVDTALALRNLEPIYGFTSNDPPRFKRAAGHKDLFYIDDKDVDIKDIVEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPSEIRKSEFKEDGLPVDVKLPVKHLITRELQLYYEKITDLTLKKPGSIPFRRALVSLSADSGLHPLVPYFTFFVADEVARNLNNLAVLFALMRLVRSLLQNSQIHIELYLHQLMPPIITCIVAKRIGNRLSDEHWELRNFSANLVTSICQRFGHIYHNLQPRVMKTFLHSFLDPTKALPQHYGAIKGIEALGSRLIRLLILPNLEPYLHLLEPEMQPEKQENEMKRHEAWQVYGALLGAAGQCVHEKVKTFGNLFSPPTQVTSRGSGKSVIAMPGKRKASTVNLMQQQQLPPMKKLVTDGTGGAVPMNSMSVDMQGSTGGYSSMMGVSSMSMARQISNDNVPGRDIGDQQRKVSSTLAQAWKDDIDAGNLVSSVVELFGESVLPFVPNPEAYMFL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0736 537 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Gso18g0736 537 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Gso18g0736 537 CDD TAF6C 165 381 IPR011442 GO:0006367
Gso18g0736 537 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 537 - -
Gso18g0736 537 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Gso18g0736 537 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 537 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Gso18g0736 537 SUPERFAMILY ARM repeat 226 388 IPR016024 -
Gso18g0736 537 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Gso18g0736 537 Gene3D - 164 369 IPR046344 GO:0006367
Gso18g0736 537 SMART TAF_cls 2 68 IPR004823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0736 Gso-Chr18 8770265 8776439 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0736 K03131 - gmx:100788777 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0736 18 8770265 8776439 Gso8g2669 8 44367453 44374237 GST