Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0274 ATGCCAAAAGGGATGGCTTCAGTCACCACATTTTCACTAATGTTACAGTTTCTGTTCTTTATACTATGTTCTTCGTTTGGTCAGCTAAGCTTAGCTTTCACGTCGCAAGAGTACCATGAGGCTCTTGAGAAATCCATTCTCTTCTTCGAGGGACAACGATCTGGGAAATTGCCTTCCAACCAGCAACAAACATGGAGGGGAGATTCTGGATTGTCCGATGGCTCTTCCTACCATGTGGACTTAGTAGGCGGTTATTATGATGCTGGAGACAACGTCAAGTTTGGGTTGCCAATGGCCTTTACCACTACATTGTTAGCATGGAGTGTGATTGAATTTGGAAGCTCAATGCAGGACCAACTTGAAAATGCCAGAGCTGCTATTCGTTGGAGCACGGATTACCTTCTTAAGGCAGCCACCACCACCCCTGACACATTATATGTCCAAGTAGGAGAGCCGAACATGGATCATAGGTGCTGGGAAAGGGCTGAAGATATGGACACTCCACGCAACGTGTATAAAGTATCAGCTACAAACCCAGGTTCGGATGTAGCAGCAGAGACGGCAGCTGCATTGGCTGCTTCTTCAATAGTATTCAGAGATTCTGATCCAAGCTATTCCTCCAAATTGCTTCAAGCAGCCATCAAAGTATTCAATTTTGCAGACCGTTACAGGGGTTCTTATAGTGATTCTCTTAATTCGGTTGTCTGTCCATTCTACTGCTCTTACTCTGGATACCATGATGAGCTTCTGTGGGGTGCATCATGGATTTATAAAGCATCAGGAATTAACACTTATATACAATATATACAATCCAATGGCCACATATTAGGGGCTGATGATGATGGTTACACATTCAGTTGGGATGACAAGCGACCTGGAACAAAAATCCTGCTTTCCAAGGAATTCCTAGAGGAAAATTCTGAAGAGTTCCAACTATATAAGGCACATGCAGACAATTACATTTGTTCGCTAATGTCGGGAACACCCGGTTTCCAGGCTCAGTACACCCGAGGGGGGCTTCTGTACAAAGGGAGCGAGAGCAATTTGCAGTACGTAACATCAACTAGCTTCCTTCTCTTGACATACGCCAAATATCTGAACACAAACGGCGGTAATGTAGTTCGATGTGGGACTTCAGCAGTCACGGGCGAAAACCTAGTAACACTAGCTAAAGCACAAGTGGACTACATTCTGGGCAACAATCCAACAAAGATGTCTTATATGGTGGGTTTTGGAGAGAGGTATCCAAAGCATATCCACCACAGGGGTTCCTCTCTGCCTTCCATCCACGCACACACTCAACACATTTCATGCAACGACGGCTTTCAGTTTTTCCATTCTTCCTCGCCCAACCCTAATATCCTTGTTGGAGCCATCGTAGGTGGTCCTGATAACAATGACAACTTCTCTGATGATCGACATAACTATCAGCAGTCTGAGCCAGCAACATACATCAATGCGCCGTTTGTAGGTGCTCTTGCCTATTTCTCTGCCAACCCACCAACAACCTATTAG 1515 0.4508 MPKGMASVTTFSLMLQFLFFILCSSFGQLSLAFTSQEYHEALEKSILFFEGQRSGKLPSNQQQTWRGDSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGSSMQDQLENARAAIRWSTDYLLKAATTTPDTLYVQVGEPNMDHRCWERAEDMDTPRNVYKVSATNPGSDVAAETAAALAASSIVFRDSDPSYSSKLLQAAIKVFNFADRYRGSYSDSLNSVVCPFYCSYSGYHDELLWGASWIYKASGINTYIQYIQSNGHILGADDDGYTFSWDDKRPGTKILLSKEFLEENSEEFQLYKAHADNYICSLMSGTPGFQAQYTRGGLLYKGSESNLQYVTSTSFLLLTYAKYLNTNGGNVVRCGTSAVTGENLVTLAKAQVDYILGNNPTKMSYMVGFGERYPKHIHHRGSSLPSIHAHTQHISCNDGFQFFHSSSPNPNILVGAIVGGPDNNDNFSDDRHNYQQSEPATYINAPFVGALAYFSANPPTTY* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0274 504 PANTHER ENDOGLUCANASE 4 15 499 - -
Gso18g0274 504 PANTHER ENDO-1,4-BETA-GLUCANASE 15 499 - -
Gso18g0274 504 Gene3D - 33 503 IPR012341 GO:0005975
Gso18g0274 504 SUPERFAMILY Six-hairpin glycosidases 36 498 IPR008928 GO:0005975
Gso18g0274 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 396 422 IPR018221 -
Gso18g0274 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 469 487 IPR033126 -
Gso18g0274 504 Pfam Glycosyl hydrolase family 9 38 493 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0274 Gso-Chr18 2419576 2423149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0274 5 497 Glycoside Hydrolase AT1G02800 63.022 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0274 - - gmx:732658 1026.16