Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0186 ATGCTTTGCGTCAACACTGCCTTCACCTCTTTCTTGCCCAGAAAATCAACTTGCTTCTTTTCCTCCAAATCAACCACCCCAATTTCCTGCACCCTCCAAGGAACAGTTGCAGAACCAAAATCTACAGCTGCTGGTGAACCTCTTTTGCTAAATGCAGTTCGTGGGATAGATGTTGAAAGACCCCCGGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACCATCTGTGAGAAATATCCTTCATTCCGTGAAAGATCTGAAAATGTTGATCTCGTGGTGGAAATTTCTCTGCAACCATGGCATGTTTTTAAGCCCGATGGAGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGTAAGGGTCCTGTTATATTTGATCCTATTCACACAGCTGCCCAGGTTGATCAAGTGAGGGAGTTTATTCCTGAAGAATCAGTTCCATATGTTGGTGAAGCACTGACAATTTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTTGGGGCACCATTCACCCTGGCATCATATGTGGTTGAAGGTGGTTCATCAAAAAACTTCTCAAAAATAAAGAGATTGGCTTTCTCTGAATCCAAGATCCTGCACTCATTACTGCAGAAGTTTACAACATCAATGGCCAGATACATTCAATACCAAGCTGACAATGGAGCTCAAGCTGTTCAGATCTTTGATTCATGGGCAACAGAACTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTATTGATACTGTGAAGAAAAGTCATCCAAACCTCCCTTTGATCCTCTATGCAAGTGGGTCTGGGGGTTTGCTTGAAAGACTAGCTTTGACAGGCGTGGATGTAGTTAGCTTGGATTGGACGGTTGATATGGCTGATGGTAGGAGGCGACTGGGACCGAATATAGCTGTCCAGGGGAACGTGGACCCTGGCGTTCTTTTTGGTTCAAAAGAGTTCATCACTGATCGGATAAATGATACTGTGAGAAAAGCAGGTAGAGGGAAACATATCTTGAATCTTGGACATGGCATTAAAGTAGGTACGCCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCTAAATCAATCAGATACTAA 1164 0.4287 MLCVNTAFTSFLPRKSTCFFSSKSTTPISCTLQGTVAEPKSTAAGEPLLLNAVRGIDVERPPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHTAAQVDQVREFIPEESVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKSHPNLPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKEFITDRINDTVRKAGRGKHILNLGHGIKVGTPEENVAHFFEVAKSIRY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0186 387 SUPERFAMILY UROD/MetE-like 48 386 IPR038071 -
Gso18g0186 387 Pfam Uroporphyrinogen decarboxylase (URO-D) 48 384 IPR000257 GO:0004853|GO:0006779
Gso18g0186 387 TIGRFAM hemE: uroporphyrinogen decarboxylase 49 383 IPR006361 GO:0004853|GO:0006779
Gso18g0186 387 CDD URO-D 50 384 IPR006361 GO:0004853|GO:0006779
Gso18g0186 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 182 198 IPR000257 GO:0004853|GO:0006779
Gso18g0186 387 Gene3D - 35 387 IPR038071 -
Gso18g0186 387 Hamap Uroporphyrinogen decarboxylase [hemE]. 46 386 IPR006361 GO:0004853|GO:0006779
Gso18g0186 387 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 18 387 - -
Gso18g0186 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 62 71 IPR000257 GO:0004853|GO:0006779
Gso18g0186 387 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 18 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0186 Gso-Chr18 1627826 1631501 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0186 K01599 - gmx:100800753 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0186 18 1627826 1631501 Gso18g0186 18 1627826 1631501 ECH
Gso18g0186 18 1627826 1631501 Gso13g1432 13 29802100 29805731 GST