Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0035 ATGATGGCTTTGGAGGATCTCCAATACTTGTCGCTCCTTTCTAAGGTTTGCACCGAGTTGGAGTCCCACACCGGCACCGCCGACAAGGTCCTCGCCGAATTCATCACCGATTTGGCCAGCTCATCGGAGAACCTTCAGGAATTCAACGCCAAGCTCAACGACAACGGTGCCGACATGCCTGATTACCTTGTCCGAACTCTCTTCACCATTATTCGCTCCGTTCTTTTCCCCAACCCTACAAGCAACCACCTCAAACACTGCGCCAACTTCGTCCACGATGGCGAGAGCTCCCAGTTGAGGATCATTCCGCAGGATGCAACGGCTCTTTCGGGCATCAGTATTGTTGAAAAAGATGACGTTTCTTCTTCGCTGAAGAAGACAATGAACTCTCCGGAAATATGGGAGGCAAAACAGTTGATTGCTTCCGGTTTCTTGAATGTAGAGGAGAGAGATGAATTCATATATCAAGAAGAAGAAGATGCTGAAGAGGATCTTGAGATCGAGTTGAATCAGGATGAACCTGCATTCTTGCAAGGCCAGACTAAATACTCAGTGGATATGTCTCCTGTTAGGATTTTCAAGAATCCAGAAGGTTCTCTGAGTCGTGCCGCTGCACTCCAGTCTGCACTTACAAAGGAGCGCAGGGAAGTGCGAGAACAACAACACCGTACAGTGTTTGATTCAATTCCAAAGGATCTCAATCGCCCTTGGGAAGACCCTATGCCGGAGACAGGCGAAAGATACCTTGCTCATGAGCTTCGGGGTGTTGGCTTATCCGCCTATGATATGCCGGAATGGAAGAAAGAGGCCTATGGGAAAACCATTACCTTTGGGCGGAAGTCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCGATTTACAAGTTAAAGAAGGAATTGATTCAGGCTGTGCATGATAATCAGGTGTTGGTAGTGATTGGAGAAACCGGTTCTGGGAAGACTACTCAGGTTACCCAATATCTCGCTGAAGCGGGGTACACCACAAAGGGCAAAATTGGATGTACTCAACCCCGCAGGGTGGCTGCGACGTCGGTTGCAAAGAGGGTTGCAGAAGAGTTTGGTTGTCGATTGGGAGAGGAAGTTGGTTATTCCATTCAGTTTGAGAATTGCACTGGACCGGATACCGTCATCAAGTACATGACAGATGGTATGCTCCTTAGGGAAATATTGGTTGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGATGAAGCCCACGAGAGAACTATTTATACTGATCTTCTTTTTGGACTGCTGAAGCAGCTTGTGAAGCGTAGACCTGAGCTGAGATTGATTGTCACGTCTGCTACTCTAAATGCTGAAAAATTTTCAGAATATTTCTTTGACTGTAACATCTTCACCATTCCTGGTAGAATGTTTCCTGTGGAGATACTTTATGCTAAACAGCCTGAAAGTGATTACTTGGATGCAGCCTTAATCACTGTTCTACAGATACATTTGACAGAACCTGAAGGAGACATTCTCCTCTTCTTGACTGGTCAAGAAGAGATTGATTTTGCTTGCCAATCACTCCATGAGAGAATGAAGGGATTAGGTAAGAATGTTCCGGAGCTGATCATTTTACCGGTTTATAGTGCCCTTCCAAGTGAAATGCAGTCTAGGATATTTGAACCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATCGATGGTATATTTTATGTAATTGATCCTGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCGGGACGTGCAGGGCGTACTGGACCTGGGAAGTGTTATCGCCTCTATACTGAGAGTGCATATAGGAATGAGATGTCTCCCACTACAATTCCAGAGATTCAAAGGGTAAATATGGCAACAACTACTCTCAATATGAAAGCTATGGGCATAAACGATCTACTGTCCTTTGATTTTATGGATTCACCATCAACCCAAGCACTTATTTCTGCCATGGGGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCGCCATTGTCCAAGATGCTGCTTGCCAGTGTGGAACTTGGCTGCAGTGATGAGATTTTAACCATAATTTCCATGATCCAAACTGGCAATATTTTTCACAGGCCTAGGGAAAAACAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCTGAAGGTGACCATCTTACACTACTTGCTATTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGGCCGTGGTGTTTTGAGAACTTTGTTCAATCCCGATCGTTAAGAAGAGCACAGGATGTCAGGAAACAGCTTCTCACCATCATGGATAAGTACAAATTGGAGGTTGTAAGTGCTGGAAATAACCTCACCAAAGTCAGGAAGGCTATCACTGCAGGATTCTTTTTCCATGTTGCTAGAAAGGACCCTCGGGAAGGTTACAGGACTCTAGTTGAGAACCAGCCTGTATATATCCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCAGACTGGGTCATCTACCACGAGCTTGTGATGACAAGTAAGGAATATATGCGTGAGGTCACTGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAAATTCTTCAAAGTGGCAGATCCTACGAAGATGAGCAAGCGAAAGCGCCAAGAGTGTTTAGAACCACTTTACGATAGATACCATGAGCCAAATTCATGGCGTTTGAGTAAGCGCCGTGCATGA 2838 0.45 MMALEDLQYLSLLSKVCTELESHTGTADKVLAEFITDLASSSENLQEFNAKLNDNGADMPDYLVRTLFTIIRSVLFPNPTSNHLKHCANFVHDGESSQLRIIPQDATALSGISIVEKDDVSSSLKKTMNSPEIWEAKQLIASGFLNVEERDEFIYQEEEDAEEDLEIELNQDEPAFLQGQTKYSVDMSPVRIFKNPEGSLSRAAALQSALTKERREVREQQHRTVFDSIPKDLNRPWEDPMPETGERYLAHELRGVGLSAYDMPEWKKEAYGKTITFGRKSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYSIQFENCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIYTDLLFGLLKQLVKRRPELRLIVTSATLNAEKFSEYFFDCNIFTIPGRMFPVEILYAKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLHERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRVNMATTTLNMKAMGINDLLSFDFMDSPSTQALISAMGQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVELGCSDEILTIISMIQTGNIFHRPREKQAQADQKRAKFFQPEGDHLTLLAIYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLEVVSAGNNLTKVRKAITAGFFFHVARKDPREGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTSKEYMREVTVIDPKWLVELAPKFFKVADPTKMSKRKRQECLEPLYDRYHEPNSWRLSKRRA* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0035 945 CDD SF2_C_RHA 469 630 - -
Gso18g0035 945 Pfam Helicase associated domain (HA2) 684 772 IPR007502 GO:0004386
Gso18g0035 945 Pfam DEAD/DEAH box helicase 298 450 IPR011545 GO:0003676|GO:0005524
Gso18g0035 945 Gene3D - 468 642 IPR027417 -
Gso18g0035 945 SMART ha2_5 683 773 IPR007502 GO:0004386
Gso18g0035 945 PANTHER ATP-DEPENDENT RNA HELICASE 96 945 - -
Gso18g0035 945 Coils Coil 203 223 - -
Gso18g0035 945 CDD DEXHc_DHX8 287 465 IPR044762 GO:0000398|GO:0003724|GO:0005524
Gso18g0035 945 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 483 663 IPR001650 -
Gso18g0035 945 Pfam Helicase conserved C-terminal domain 490 622 IPR001650 -
Gso18g0035 945 PANTHER - 96 945 - -
Gso18g0035 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 855 IPR027417 -
Gso18g0035 945 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 407 416 IPR002464 -
Gso18g0035 945 Gene3D - 262 467 IPR027417 -
Gso18g0035 945 Gene3D - 667 824 - -
Gso18g0035 945 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 302 465 IPR014001 -
Gso18g0035 945 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 830 906 IPR011709 -
Gso18g0035 945 SMART helicmild6 522 622 IPR001650 -
Gso18g0035 945 SMART ultradead3 290 474 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0035 Gso-Chr18 333820 337916 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0035 K12818 - gmx:100815173 1862.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0886 8 8243382 8245107 Gso18g0035 18 333820 337916 PCT