Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0020 ATGAGTACTGTTGATAAAATGTTGATCAAGGGCATCCGGAGCTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGCCCCAATGGTGCTGGCAAGACAACCATCATTGAGTGCTTGAAGCTTTCCTGCACCGGCGAGTTGCCACCTAACGCTAGGTCTGGCCACAGCTTCATCCACGACCCAAAGGTTGCGGGGGAAACCGAAACAAAGGGTCAGATTAAGCTCCGTTTCAAAACGGCCGCCGGTAAAGACGTGGTCTGCGTAAGGTCCTTTCAGCTCACACAGAAGGCCTCCAAGATGGAATACAAGGCTATCGAAAGTGTGCTTCAAACTATTAATCCTCACACTGGCGAGAAAGTTTGCCTCAGCTATCGATGCGCTGACATGGATAAAGAGATTCCTGCCCTCATGGGCGTCTCCAAGGCCATTCTCGAAAATGTTATATTCGTTCATCAAGATGAAGCCAACTGGCCTCTCCAGGATCCTTCTACCTTAAAGAAAAAGTTCGACGATATCTTTTCCGCTACCAGATACACCAAGGCACTCGAAGTTATAAAGAAACTTCACAAGGAGCAGGCTCAAGAGATTAAGACTTACAAGCTCAAACTGGAAAATCTTCAGACTCTCAAAGATGCTGCTTACAAGCTTCGGGAAAGCATTGCACAGGATCAAGAGAAAACAGAGTCTGCAGAATGTCAACTGCAACAGTTGGATGGCAGCATTCAAGAATTGGATCATAAAATTCATCACACGGAGGAAACATTGAAATATTTGCGGAAGCTGCAGGAGCAGATATCAACTAAAACTGCTCAACGAAGCATCCTGTTTAAGGAACAACAGAAACAATATCTAGCTCTCACTGAGGAGATTGAAGACACCGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAAGTTTAGAAACAAAAATAAGCAGGTTGGAAAGAGAAACGGAGGACATTGACTGTACAAGTTCTACCCTTAAGGAGACCATTGCTGAATCCATCGAAGTGATTGCCAAGCTACAAGCTGAAGCAGAAGCTCACATGTCATTCAAGAATGAACGTGATTCCTCCATTCACAATCTTTTCACTACATATAACTTGGGATCTCTTCCAAAGTCACCTTTCAGTGCTGAGGTTGCTTTAAACCTCACTAATCGTGTAAAATCAAGGTTGGAAGATCTTGAGAAGGACCTGGATGATAAAAAGAAGGCAAATGACAATGAAATCAAGATGGCATTTGATTGCTACATGAATGCAAATGACCGTTTGAAACATACTGAGGCTAAAATAAAGGCTATGACAGGGAGCAAGAGTGGCATTTCGAAGCGTATTGAAGAGAAGAAAAATGAGCTTGATTCACTTGAACTTCAAATATCTGATGAAAACTTCTCTCAATTAGATGAAAGAGAAAGAAATTTGGAAAATGAGGTTAAGAGGAAGGCAAGCCAACTCGACGAAAGACAATTTGAACCAAATAAATGTGAAGTGGAAAAGGAGATATATAGTGTAGATCAAAAGATTAAGGCTGTCAGTCGAGAGAAGGATATCATGGTTTCTGATTCACAGGACAGAGTTAAGCTATCTTATAAGAAGGGAGAGTTGGAAAGTCAGAAGAAGAAACATAAAAAGATAATTGATGAACAAAAGGACAAAATAAGAAAGGTGCTGAAAGGGAGGGTTCCTCTTGATAAGGATGTGAAGAAGGAAATTATGCAAGCATTAAGGGCTGTTGGAGCTGAATTTGATGACCTGAATGCAAAGTACCGTGAAGCTGAGAAGGAAGTCAATGTGTTGCAGGTGAAAATACAAGAAGTTAATAGTAACCTATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATATATTGAATCTAAGCTTCAGTCTTTGGACCAGCAATGTTCTGGAATTGATTCTTATCTCAAAGTTTTAGAGTCTGCCAAGGAGAAAAGAGATGTCCAAAGAAGCAAATATAATATTGCTGATGGTATGCGGCAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTAATCATGTTTGCCCTTGCTGTGAGCGTCCTTTTTCTCCAGAAGAAGAAGACAGTTTTGTCAAAAAGCAAAGAGTGAAGGCTACCAGTTCAGCTGGACATATGAAAGTTCTCGCCGTAGAATCCTCAAATGCAGAGTCTCATTTTCAGCAATTGGACAAGCTTCGTATGCTTTATGAAGAATATGTTAAACTTGGCAAGGAAACAATCCCTAATTCCGAAAAGGAACTTCAGCAACTTAAAGAAGAGATGGATGACAAATCTCAGGCTCTTGATGATGTTTTAGGCGTTTTAGCACAAGTAAAATCTGACAAGGATTTGGTTGAGACATTGGTGCAACCTGTTGAAAATGCTGACCGGATTTTCCAAGAAATTCAAGCTTTACAAAAGCAAGTTGAGGATTTAGAAGATAAGCATAATTTTCGAGCACAGGGAGTGAGGACTCTAGAAGAGATTCAATTGGAGCTTAACACATTGCAGAGCACGAAGGAGAATTTGCAATCTGAATTGGATCGGTTGAAGGATGAACAGAGGTATATGGAGAAGGATCTATCAAGTATTCAAATGCGGTGGCACACTGTAAGGGAGGAAAAAACAAAGGCAACTAACATATTGCAAGGTGTTAAAAGATTAGAAGAAGAATTGGAACGTTTAACTGAAGAAAAGACCCAAGTTGATCTCGACGAGAAGCATTTGGCAGATGCTCTTGGACCTTTATCCAAGGAGACAGACAAATTACTTGCTAACCATAATGAACTGAAAATTAGACTCGAGCGTGAGTATGAGGACCTGGCTGAACAGAAGAGAAGTTATCAACAAGAAGCTCAAGCACTTTTTAAAATGAATTCTAAGATCAAAACGTATTCTGATTTAAAGAAAGGAGACAGGCTAAAGGAACTGCAGGAAAAGAAATCTTCATCAGAATCTCAACTTCAAAGTTTTGATACAAGGAAGCAGGAAATTTTAGCTGAACTAAACAAAAGTAAAGATTTGATGCGAGGTCAAGATCAACTAAAAAGAAATATTGAGGACAACTTAAATTACCGGAAAACAAAGGCTGAAGTAGATGAGCTAGCACATGAAATTGAAACAATGGAAGAAAATATATTGAAGGCTGGTAGGATTTCCACAGTTGAAACTGAACTCCAGAAACTATCACAGGAGAGGGAGAGACTTCTTTCAGAGTTAAACAGGTGCCGTGGAACAATGTCTGTTTACCAAAGCAATATTTCCAAAAATAAGGTTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGCGATACTTTGACCAACTTATCCAGCTTAAGACAACTGAAATGGCCAACAAGGATCTAGACAGATACTACAGTGCACTTGATAAAGCACTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGGGAATTGTGGCAGCAAACCTATAGAGGACAAGATATAGACTACATCAGTATTCATTCAGACTCCGAAGGTGCAGGGACCCGTTCCTACAGTTACAAGGTTCTCATGCAGACTGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTTCTGGCCTCTCTTATCATACGGTTGGCTTTAGCTGAAACGTTTTGTCTCAATTGTGGAATACTTGCACTGGACGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTAGCTGCAGCTCTCGTAAGGATCATGGAGGACAGGAAAGGGCAGGAAAATTTTCAGCTAATTGTAATCACTCATGATGAGCGTTTTGCTCAACTGATAGGGCAGCGCCAGCATGCAGAGAGATATTATCGTGTCGCCAAAGATGACCATCAGCACAGTATAATCGAAAGCCAGGAGATATTTGACTGA 3951 0.4075 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESAECQLQQLDGSIQELDHKIHHTEETLKYLRKLQEQISTKTAQRSILFKEQQKQYLALTEEIEDTDEELMEWKTKFEERIASLETKISRLERETEDIDCTSSTLKETIAESIEVIAKLQAEAEAHMSFKNERDSSIHNLFTTYNLGSLPKSPFSAEVALNLTNRVKSRLEDLEKDLDDKKKANDNEIKMAFDCYMNANDRLKHTEAKIKAMTGSKSGISKRIEEKKNELDSLELQISDENFSQLDERERNLENEVKRKASQLDERQFEPNKCEVEKEIYSVDQKIKAVSREKDIMVSDSQDRVKLSYKKGELESQKKKHKKIIDEQKDKIRKVLKGRVPLDKDVKKEIMQALRAVGAEFDDLNAKYREAEKEVNVLQVKIQEVNSNLSKHHKDLESRKRYIESKLQSLDQQCSGIDSYLKVLESAKEKRDVQRSKYNIADGMRQMFDPFERVARANHVCPCCERPFSPEEEDSFVKKQRVKATSSAGHMKVLAVESSNAESHFQQLDKLRMLYEEYVKLGKETIPNSEKELQQLKEEMDDKSQALDDVLGVLAQVKSDKDLVETLVQPVENADRIFQEIQALQKQVEDLEDKHNFRAQGVRTLEEIQLELNTLQSTKENLQSELDRLKDEQRYMEKDLSSIQMRWHTVREEKTKATNILQGVKRLEEELERLTEEKTQVDLDEKHLADALGPLSKETDKLLANHNELKIRLEREYEDLAEQKRSYQQEAQALFKMNSKIKTYSDLKKGDRLKELQEKKSSSESQLQSFDTRKQEILAELNKSKDLMRGQDQLKRNIEDNLNYRKTKAEVDELAHEIETMEENILKAGRISTVETELQKLSQERERLLSELNRCRGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYSALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0020 1316 Coils Coil 884 918 - -
Gso18g0020 1316 Coils Coil 398 425 - -
Gso18g0020 1316 Coils Coil 987 1007 - -
Gso18g0020 1316 Coils Coil 937 971 - -
Gso18g0020 1316 Gene3D - 4 299 IPR027417 -
Gso18g0020 1316 Coils Coil 545 565 - -
Gso18g0020 1316 Coils Coil 1038 1058 - -
Gso18g0020 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Gso18g0020 1316 Coils Coil 451 497 - -
Gso18g0020 1316 TIGRFAM rad50: rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Gso18g0020 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 276 IPR027417 -
Gso18g0020 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Gso18g0020 1316 Gene3D - 1064 1315 IPR027417 -
Gso18g0020 1316 Pfam Rad50 zinc hook motif 688 720 IPR013134 -
Gso18g0020 1316 Pfam AAA domain 7 229 IPR038729 GO:0140664
Gso18g0020 1316 Coils Coil 235 255 - -
Gso18g0020 1316 Coils Coil 808 828 - -
Gso18g0020 1316 Coils Coil 1065 1092 - -
Gso18g0020 1316 Coils Coil 753 787 - -
Gso18g0020 1316 CDD ABC_Rad50 4 170 IPR045171 -
Gso18g0020 1316 Coils Coil 588 622 - -
Gso18g0020 1316 Coils Coil 839 873 - -
Gso18g0020 1316 Coils Coil 627 647 - -
Gso18g0020 1316 Coils Coil 197 217 - -
Gso18g0020 1316 CDD ABC_Rad50 1205 1308 IPR045171 -
Gso18g0020 1316 Coils Coil 284 336 - -
Gso18g0020 1316 PANTHER RAD50 1 1314 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0020 K10866 - gmx:100818545 2472.58