Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0011 ATGGATTTGGTTGAATTGGAGGCGGTGGAAGGGCTCCGATGGGCGTGGAATTCGTGGGCGGCGGATGGGACAAATATGATAATCCCACTGAGCATAATGTGCACACCCTTGATGTTGTTGAACAGTGAGGTCCCTCTTCTCCCTTACGACCCTCTCCTCTGCTCCCGATGCGGCGCCGTTTTGAACCCCTACGCACGCCTCGACTACCAGTCCCGCATCTGGCACTGCCCCTTCTGCTCCCTACGCAACCCCTTCCCCCGCCCCATCGCCGACACCAACCTCCCCGCCGAACTCTTCCCCACCTACAGCACCGTCGAGTACTCGTCTCCCTCTCCCTCTCCCCCTCCCCCTCCCCCTGCCTTCGTCTTTCTCCTCGATCTCTCCACTCCCCAAGACGAACTTCCTCCCCTCAAGAACCAGCTCCTCCACCTCCTCCACCACTTGCCCGACCACTCCCTCGTCTCTCTCATCACCTTCGACTCCATGGTCTATCTCCACCATCTCTCTTCTTCCCACTTTTCCTCTCTCCTCGTCTTTCACGGCAACCGCCATCTCTCCTCCAATCAGATCCGCCACTTCCTTAACCCCCACCGCCACCAGGCTTTTCTTTTGCCTATTTCCGAATGCCAATTCTCCATCACTACTGCCATTGAAGAGATCCATTCTACATCCAACTCCACCATCTCCGCCTCTCGCCCTCCCAGGTGCACCGGCTCTGCAATCTCCGTCGCCCTTGGTCTTTTGGAGTCTTGCCCCATCAATACAGGCTCCAGGATCTTGGTCTTCACCTCTGGACCTGCTACTCTGGGACCCGGAATCGTTGTCGATTCTGATCGCCGCCAACCCATCAGAACCCACCATCACATCTTCAACGCCCAAGCAACACACTATGCTAAGTCTTCCGCTTTCTATAATCAACTCTCCAAGAGGCTATCCGGTGCATCTGTTGTTCTCGATCTCTTTGCCTGTTCCCTTGATCAAGTTGGGGCAGCCGAGCTCCGAGGACCCGTTGAGCACTCCGGTGGATTCATCGTTCTCTCTGAGTCTTTTGATTCCGATCAGTTCAAGAATTGTCTGAGGCAGATGTTCAGATGTGATGACCAGGGCCACTTGAGAATGAATTTTGATGCGACTATTGAAATAGTCACCACCAAAGACGTGAAAATCTGTGGAGCGCTTGGTCCTTGTGTGTCCCTTGAGAGAAACAACTGTTTGGTGAGCGAGGCTGAGGTTGGAGAAGGTGGCACCTCTGTCTGGAAGTTAAACACGCTCACCCACAAAACTTGCATTGCGTTTTTCTTCCAAGTGAATCAGGAGCAGAAAATGAAAATTCAACCGGGCTCTGCATTTTTAATCCAGTTTATAACGCGATACAGGCAGGGAAACATGATCCGGAAAAGAGTGACGACTGCTGCAAGGCGATGGGTTGCAAGCCATTCGGCAGATATTGGTGCCGGGTTTGATCAAGAAGCCGCAGCTGCAGTCATGGCAAGACTTGCCATTCTCCGGGCAGAAACATGCCATGCCCGTGATGTCATTAGATGGCTGGATGACACGCTTATACGTTTCACTTCCAAGTTTGGGGACTATGTCCCTGAAGATCCATCCTCTTTCCGCCTATCCTCCAACTTCTCCCTTTATCCCCAGTTTATGTACCACCTGAGGCGATCTCAATTCATTGATGTCTCTAACACTACTCCGGATGAAACTGCATTCTTCCGCCTCGTGCTCAATCGCGAGGGAGTAGTAGGATCCCTTATAATGATTCAACCCACACTTTTCCAATATTCGTTTGATGGCCCACCGGTGCCAGTGCTGCTAGATATTCGTTCCATTTCTCCAGATTTTATCTTGCTCTTTGATTCTTTCTTCTGTGTGGTGATTCATTATGGGTCCAAGATTGCCCAGTGGAGGAAGCTGGGTTATGATAAGGACCCCAATCACGAAAGCTTGAGAAAGCTGTTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTTGCTGACCGCCTTCCAGTGCCAAGGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGATTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACCTACACAGAGGGTTCCGACATTATATTTACCGATGACCTCAGCTTGGAAGTTTTTCTGGATCAGTTGCAGGTGCTGGCAGTGCAAAGCTAA 2193 0.5125 MDLVELEAVEGLRWAWNSWAADGTNMIIPLSIMCTPLMLLNSEVPLLPYDPLLCSRCGAVLNPYARLDYQSRIWHCPFCSLRNPFPRPIADTNLPAELFPTYSTVEYSSPSPSPPPPPPAFVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSLVSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFLNPHRHQAFLLPISECQFSITTAIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRILVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESFDSDQFKNCLRQMFRCDDQGHLRMNFDATIEIVTTKDVKICGALGPCVSLERNNCLVSEAEVGEGGTSVWKLNTLTHKTCIAFFFQVNQEQKMKIQPGSAFLIQFITRYRQGNMIRKRVTTAARRWVASHSADIGAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMYHLRRSQFIDVSNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPELDAEQLVADRLPVPRIIRCDQHSSQARFLLAKLNPSVTQNSTYTEGSDIIFTDDLSLEVFLDQLQVLAVQS* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0011 730 CDD Sec23_C 580 700 IPR037550 GO:0030127|GO:0090114
Gso18g0011 730 Gene3D - 6 473 - -
Gso18g0011 730 Pfam Sec23/Sec24 beta-sandwich domain 375 476 IPR012990 -
Gso18g0011 730 Gene3D Severin 590 694 IPR029006 -
Gso18g0011 730 Gene3D - 48 104 - -
Gso18g0011 730 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 730 - -
Gso18g0011 730 SUPERFAMILY beta-sandwich domain of Sec23/24 3 487 - -
Gso18g0011 730 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 730 IPR037364 -
Gso18g0011 730 Pfam Sec23/Sec24 zinc finger 51 87 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso18g0011 730 SUPERFAMILY Helical domain of Sec23/24 488 590 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gso18g0011 730 Gene3D von Willebrand factor, type A domain 118 373 IPR036465 -
Gso18g0011 730 SUPERFAMILY Zn-finger domain of Sec23/24 43 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso18g0011 730 Pfam Sec23/Sec24 trunk domain 116 362 IPR006896 GO:0006886|GO:0006888|GO:0030127
Gso18g0011 730 SUPERFAMILY vWA-like 118 363 IPR036465 -
Gso18g0011 730 Gene3D Sec23/Sec24 helical domain 485 727 - -
Gso18g0011 730 Pfam Gelsolin repeat 602 688 IPR007123 -
Gso18g0011 730 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 591 729 IPR036180 -
Gso18g0011 730 Pfam Sec23/Sec24 helical domain 488 584 IPR006900 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0011 Gso-Chr18 140811 143391 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0011 K14006 - gmx:100784000 1408.28