Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0005 ATGGGGAAGAAAGTCAGAAAGAAGACTCGAGGTTCTGCCAAGGAGATGGGGGTTGCTACCCATTTGCCAATCAAGGTTATTGAATCATCCAACCCGACTGTCGAGTCTTTTGATGAGGTTGCAAAAGAGACAAATTCTTGCCCTCATCTTGTAAAAGGGGTTAATTTTGACAGGTTGTCCACTAAGGTTGGCTCTTCTGGATCCATTAGGTGTGAAGATTGTAGGGAAGGTGCGACTAATAGAAGGAGCGGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGTGGTGCATCATTAGATTCAAAATCTGAGTCAAAATCTATATGGGTTTGTTTGGAGTGTGGTCAATATACCTGTGGAGGCGTGGGGCTACCAATAACCCCTCACTGCCATGTGGTAGGGCATGCAAGGAAAAACCGGCACCCCTTGGTGGTTCATTTTGATAAGCCCCAACTGTGTTGGTGTTTTCCTTGCAACATGCTTATTCAAGTTGATAAAATTGAAAAAACTGATGAATCAGGTCATCTTCTATCTGATGTTGTGAAATTGTTGAAAGGACGATCACAAGAAAAATCTTCAGTGGATATTGAGGATGTTTCCGTTGGGGATGGCGGTAGTATTACTTCAGAAATTAACTCAAGGGCTCTGTTTGCAAATGATTCATATGGACAAGGTGGTTATGTAGTTAGAGGTATGATTAATCTTGGGAATACTTGCTTCTTCAATTCAATTATGCAAAATCTGCTGGCTATGAATAGATTGCGGGACAACTTTCTTAAGTTAGATGCTCCTGTTGGGCCACTTATTAGTTCCTTGAAGAAGCTTTTCACTGAAACAAACCCTGAATCAGGATTGAAAAATGTTATAAATCCTAGATCTTTTTTTGGCTGTGTCTGTTCTAAGTCTCCCCAATTTCGAGGATATCAGCAGCATGACAGTCACGAATTGCTCCGTTGTTTACTGGATGGGTTAAGTACTGAAGAACTAGCCGGAAGGAAACAGAATGGTTCTCCCAAAAGAGATGGAACCTCTTCCAATACTTTAGTTGATGCTTTATTCGGGGGTCTGATATCTAGTACTGTATGTTGCATAGAGTGTGGGCATTTCTCAACAGTGTATGAACCTTTCTTAGATCTTTCTCTGCCCGTTCCAACTAAGAAACCTCCACCTCGCAAGGCCCAACAAGAACCCCGAACCAAAAAAGCTAAACTTCCACCAAAAAAAGGTGGAAAGATTCGAGTCAGAGTTAACAGGGATACTGATTCCTTACCTGTTCAAACTCAATCAAACCAATTATCCAGCCCCGAATCATCTTGCCTTGATCAGTCCATTATATCAGTTGCTGGAGAGATGGGGACTTGTTCTGCTGATTCTACATTATTAGTTTCTGAAGAAATAAAAAGTGTAGCTGATAAAGAGGACTTGTCTTCACCTAATTTGGTTACTGCTGGAGAGTCTCAACATACACAAGTGATTGACAATGGTGCAATGAAAACATTAGACGAATTTTCATGGTTGGATTATGTGGAAGCTGGAGCAAATGAATGTGATTTCATTTCCCAAAAGGAGGATGCTCCAGAGGTACAGGATACTGAGAGCAAAGATGAATGTTTAAATGAATTGCATGGACAGGCCACCTGTGAATCTAGTGGTCCTGTTTGTTTCCTTAAGGAGGATCAAAACCTAAGTCCCACATTTTCTTCAGCAAATGGGTGGGAAGACGAGGTTCCATTACAAGTTCAAGGTTCAGAAGTCCTGTTACTTCCATACAAAGAAGAAAGTTCCTCTGCTGCTGAGATCATTGGAGGAGATGGTGAGGGCTCCTCATCTGTTTTGGGTGGTGGTCAAGAAGAATTGGAGTTTGATGGCTTTGGTGACTTATTCAATGAGCCTGAAGTTGTTGCTGGGCCTGCTCCTAGACCATCTTCATGTAGTGAGGTTATGGAAGCTGGTTTTATCATTGGAAGCAACAGTGAGTCTGATCCAGATGAAGTAGATGATACAGATTCTCCTGTCTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCCGAGCTTCTCTCGGATGAAAATGCCTGGCATTGTGAGAACTGTTCAAAAGTTCTCCAACATCAAAAGATGGAAGAAAAAAAGCAGGCAAGAGCTGTATCTGATAGAAATGAGACTGGAATTCATGATGAACCATGGCATGCAGTTAACTCTTGTTCTGTTAAAGTCAGAACCATTGGAAATGGGGACATAAAAAATGACCAAAACGTACAAAATTTGGTTGCATGTGATAAACACAAAACAAATCTTGAAAATGGTCAAAGAGATGAGCTTAGTTTAATTGTTAATGAAAAGGATAGTGGATCATTTGAAATGGAAGATACACATAATGATGAATTACAGTCTTCAAGTTTTCATAATACTTGCAATGAAGAAAGCTGTAGTCATTTAGCTGTTGATTCTTGTGTTACTGAAAATGTCCAAAGAAGAGATTCTCCGATGATAGGTAGTGATAACAATGACTCAGAAGAGGCTGACTCCAAAAGTGTGAAAGTGAAGAGGGATGCAACTAAGAGGGTCCTCATTTATAAAGCGCCTCCTGTCTTGACCATTCACTTGAAGAGATTCAGCCAAGATGCCCGTGGGCGCTTAAGTAAATTAAATGGCCATGTCAATTTCAGAGAAACAATGGATATTAGACCCTATATTGATCCCAGGTGCATAAATGAAGAGAAGTATGCATACCACTTGGTTGGCTTAGTGGAGCACTCCGGAACTATGAGAGGGGGTCACTATGTTGCGTATGTGAGAGGGGGCCAGAGGAACTGTGGGAAGGGTGATAAAGAGAATGAGGGTTCCACATGGTATCAGGCAAGTGATGCATATGTGCGTGAAGTTTCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTACGAAAAAATTTGA 2943 0.4108 MGKKVRKKTRGSAKEMGVATHLPIKVIESSNPTVESFDEVAKETNSCPHLVKGVNFDRLSTKVGSSGSIRCEDCREGATNRRSGKGKGKHGKKKGGASLDSKSESKSIWVCLECGQYTCGGVGLPITPHCHVVGHARKNRHPLVVHFDKPQLCWCFPCNMLIQVDKIEKTDESGHLLSDVVKLLKGRSQEKSSVDIEDVSVGDGGSITSEINSRALFANDSYGQGGYVVRGMINLGNTCFFNSIMQNLLAMNRLRDNFLKLDAPVGPLISSLKKLFTETNPESGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSPKRDGTSSNTLVDALFGGLISSTVCCIECGHFSTVYEPFLDLSLPVPTKKPPPRKAQQEPRTKKAKLPPKKGGKIRVRVNRDTDSLPVQTQSNQLSSPESSCLDQSIISVAGEMGTCSADSTLLVSEEIKSVADKEDLSSPNLVTAGESQHTQVIDNGAMKTLDEFSWLDYVEAGANECDFISQKEDAPEVQDTESKDECLNELHGQATCESSGPVCFLKEDQNLSPTFSSANGWEDEVPLQVQGSEVLLLPYKEESSSAAEIIGGDGEGSSSVLGGGQEELEFDGFGDLFNEPEVVAGPAPRPSSCSEVMEAGFIIGSNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKVLQHQKMEEKKQARAVSDRNETGIHDEPWHAVNSCSVKVRTIGNGDIKNDQNVQNLVACDKHKTNLENGQRDELSLIVNEKDSGSFEMEDTHNDELQSSSFHNTCNEESCSHLAVDSCVTENVQRRDSPMIGSDNNDSEEADSKSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDIRPYIDPRCINEEKYAYHLVGLVEHSGTMRGGHYVAYVRGGQRNCGKGDKENEGSTWYQASDAYVREVSLDEVLRCEAYILFYEKI* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0005 980 MobiDBLite consensus disorder prediction 78 100 - -
Gso18g0005 980 MobiDBLite consensus disorder prediction 825 847 - -
Gso18g0005 980 Gene3D Cysteine proteinases 715 980 - -
Gso18g0005 980 ProSiteProfiles Zinc finger UBP-type profile. 45 181 IPR001607 GO:0008270
Gso18g0005 980 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 979 - -
Gso18g0005 980 Pfam Zn-finger in ubiquitin-hydrolases and other protein 71 164 IPR001607 GO:0008270
Gso18g0005 980 Pfam Ubiquitin carboxyl-terminal hydrolase 231 977 IPR001394 GO:0004843|GO:0016579
Gso18g0005 980 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 230 980 IPR028889 -
Gso18g0005 980 Gene3D Cysteine proteinases 218 444 - -
Gso18g0005 980 MobiDBLite consensus disorder prediction 420 436 - -
Gso18g0005 980 Gene3D Cysteine proteinases 641 714 - -
Gso18g0005 980 MobiDBLite consensus disorder prediction 1 21 - -
Gso18g0005 980 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 979 - -
Gso18g0005 980 SUPERFAMILY Cysteine proteinases 229 979 IPR038765 -
Gso18g0005 980 MobiDBLite consensus disorder prediction 383 436 - -
Gso18g0005 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 181 IPR013083 -
Gso18g0005 980 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 911 928 IPR018200 GO:0004843|GO:0006511
Gso18g0005 980 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 231 246 IPR018200 GO:0004843|GO:0006511
Gso18g0005 980 SUPERFAMILY RING/U-box 46 163 - -
Gso18g0005 980 SMART Zf_UBP_1 99 152 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0005 Gso-Chr18 89749 94772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0005 852 980 Miscellaneous Gene Families AT2G24640 34.848 2.07e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0005 K11844 - gmx:100780952 1972.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0005 18 89749 94772 Gso13g1619 13 31391440 31397531 GST