Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1946 ATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAGAAACTGCATCCGTTTGATTCGTCGAAGTGGGGACGCATTTGTGGATTCCTCGTTTCGTTTGGTATTCTTGACAAAAAATGCGTCGTTGAGCCTTTGGAAGCTTCCAAGGATGATCTTCTAGTGGTACACTCTGAATCGTATTTGAATACCCTGAAGCAGAGTTCAAAAGTTGCTATGATAGTTGAGGTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATAGCCGAGTCTATATCCTGGATATGTACAATCCTGGAATATATCCTTTGGATTATGAGGCGAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGGACAGTTACTGAAGAGTACCTGCAAAAATTAGATGAAGCACTTGAGGTTGCTGGGCATAGGTTTAACCCTGAGTTGGTTATTTATAATGCTGGAACTGACATCCTAGAAGGTGATCCATTAGGAAGGTTGGAGATCAGTCCTGAAGGAATTGCCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAGGTGGTTACATGAAGTCCAGTGCTGGAGTCATTGCAGATTCAATAGTCAATCTTTCGAAGAAATGCTTGATAGAAACGAGTGGAGCTCCAAAGTCTACGTAA 1047 0.4365 MSSSSANDAEALRRNRILSSKLYFDVSPSKVPLIYSASYDIEFLGIEKLHPFDSSKWGRICGFLVSFGILDKKCVVEPLEASKDDLLVVHSESYLNTLKQSSKVAMIVEVPPVALIPNCLVQQKVLFPFRKQVGGTILAAKLAKERGWAINMGGGFHHCSAQKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHEMDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTVTEEYLQKLDEALEVAGHRFNPELVIYNAGTDILEGDPLGRLEISPEGIALRDEKVFRFAREKNIPIVMLTSGGYMKSSAGVIADSIVNLSKKCLIETSGAPKST* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1946 348 CDD HDAC_classIV 50 333 IPR044150 GO:0004407|GO:0016575
Gso17g1946 348 Pfam Histone deacetylase domain 50 331 IPR023801 -
Gso17g1946 348 Gene3D Histone deacetylase domain 31 343 IPR037138 -
Gso17g1946 348 PRINTS Histone deacetylase superfamily signature 154 177 IPR000286 -
Gso17g1946 348 PRINTS Histone deacetylase superfamily signature 188 203 IPR000286 -
Gso17g1946 348 PRINTS Histone deacetylase superfamily signature 265 275 IPR000286 -
Gso17g1946 348 SUPERFAMILY Arginase/deacetylase 28 333 IPR023696 -
Gso17g1946 348 PANTHER HISTONE DEACETYLASE 11 1 343 - -
Gso17g1946 348 PANTHER HISTONE DEACETYLASE 11 1 343 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1946 K11418 - gmx:100781276 693.345