Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1945 ATGAGTTCCACCATAGCCACGGATTCCCATGGTTTGTCAGATTCTTGGACAATAGGGGAGCGCGTGTGTGCGGCGTTGATGCCACTCATAGCGGTGGTTGAGGTTTTGATTTTGACTGTGACAGGTTGTTTCAGCTATTGCCCATGCATCAGCATTATTGATCAGAACCATAAATGTACCTATACTGCTAAGGACTTCGCAATCCTTGCTGATGAAACCAGATTTACAGTTGAAGAAGTGGAGGCATTGCATGTGTTGTTTAAAAGGTTAAGTAGCTCCCTGATTGATGATGACTCGATTCACAAGGAGGAGCTTCAATTGGCACTGTTTCAGACCCCATATGGGAAAAATCTTTTCCTAGATCGAGTTTTTGATGTTTTCGACCAAAAAAGAAACGGTGTAATCGAGTTTGACGAATTTGTCCACGCCCTCAGTGTTTTCCATCCATATGCCCCCATGGATGAAAAAATTGATTTTGCATTTAAGCTCTATGACTTGAGGCAAACTGGGTTTATCGAGCCAGAGGAAACAATTGCTGATGCGGATAAAGATAATGATGGTAAAATCAGTAGAGAAGATTGGAAAGCTTTTGTGAGCCGAAATCCATCCCTCTTGATAAACATGACACTTCCTTATTTGAAGGATATCACCAGTGTGCTTTCGAGTTTTGTTTTCAAAACGGAGGCAAAACCTTGA 696 0.4195 MSSTIATDSHGLSDSWTIGERVCAALMPLIAVVEVLILTVTGCFSYCPCISIIDQNHKCTYTAKDFAILADETRFTVEEVEALHVLFKRLSSSLIDDDSIHKEELQLALFQTPYGKNLFLDRVFDVFDQKRNGVIEFDEFVHALSVFHPYAPMDEKIDFAFKLYDLRQTGFIEPEETIADADKDNDGKISREDWKAFVSRNPSLLINMTLPYLKDITSVLSSFVFKTEAKP* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1945 231 Pfam EF hand 177 198 IPR002048 GO:0005509
Gso17g1945 231 Gene3D - 65 231 - -
Gso17g1945 231 Pfam EF hand 120 145 IPR002048 GO:0005509
Gso17g1945 231 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Gso17g1945 231 PANTHER CALCINEURIN B 11 176 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gso17g1945 231 PANTHER CALCINEURIN B 176 229 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gso17g1945 231 SMART efh_1 173 201 IPR002048 GO:0005509
Gso17g1945 231 SMART efh_1 119 147 IPR002048 GO:0005509
Gso17g1945 231 PANTHER CALCINEURIN B-LIKE PROTEIN 10 11 176 - -
Gso17g1945 231 PANTHER CALCINEURIN B-LIKE PROTEIN 10 176 229 - -
Gso17g1945 231 ProSitePatterns EF-hand calcium-binding domain. 182 194 IPR018247 -
Gso17g1945 231 SUPERFAMILY EF-hand 68 216 IPR011992 -
Gso17g1945 231 ProSiteProfiles EF-hand calcium-binding domain profile. 175 204 IPR002048 GO:0005509
Gso17g1945 231 CDD EFh 120 199 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1945 Gso-Chr17 38614976 38619758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1945 13 177 EF-hand Containing Proteins AT4G33000 60.606 3.17e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1945 K06268 - gmx:100810494 442.58