Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1934 ATGGCTTTGCGGCTTTTGGTATCGCAGGTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGTTTGGAGATCGTGCAGGGAATAGGCTTTTGGGTGCCCAAGAGAGATTTCAGTCTAGCTACCTTAGTAGCATAGCTCGTCGAGCACGTGATGCGGATGAAGCCTCTGAAGTTGCATATCTCAAAGAACTTTACCATCAAAATGATCCTGAGGCTGTGATTAGAGTATTTGAAAGCCAGCCATCTCTGCATAATAGTCCCTCAGCTCTATCTGAATATGTAAAAGCATTGGTGAAAGTTGATAGGCTTGATGAAAGTCAATTACTGAAGACACTAAGGAGAGGCATGTCCAACTCAGTGAGTGAGGAAGAAACTTTAGCTGGTCTTTCTGCTTTAAGAAATACGAGAAAATCAGAAAAAGACAATACTATTGGAACTGCTAGTAATCCAATCTATATGGTGGCTAGAGACGGCGGGAATATAAAAGATCAGATATGGCGTACACTTAGGTTCATTGCAGTGTCCTTTTTCATGATTTCTGGTGTAGGAGCACTTATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCAACCTAGCATGGAATCAAGTACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGAAGAGCTGGAAGAAATTGTTCACTACCTTCGAGATCCAAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCGAAAGGAGTTTTACTTGTTGGTCCACCTGGCACTGGGAAAACAATGTTAGCTAGAGCTATTGCTGGAGAGGCTGGGGTTCCATTCTTCTCCTGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTGAGGGATCTTTTTTCTGCTGCAAGGAAGCGAGCACCTGCTATAATATTCATTGATGAGATAGATGCTATTGGAGGAAAACGAAATGCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTACTGGTTGAGCTAGATGGATTCAAGCAAAATGAGGGCATAATTGTGATTGGCGCTACTAATTTTCCACAATCATTGGATAAGGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTATTGTTCCCAATCCGGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCCAGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGATTAACATTGCTGCTATCAAGGCTGCAATGGATGGTGCTAAAGCTGTGAGCATGGCTGATTTAGAGCATGCAAAAGACAAGATCCTGATGGGAAGTGAACGCAAGTCAGCTGTCATATCTGCGGAGTCACGGAAGTTGACTGCTTTCCACGAGGGTGGCCATGCCCTTGTGGCCATCCATACTGATGGGGCCCTCCCTGTTCACAAGGCAACTATAGTTCCCCGTGGAATGGCTCTTGGCATGGTTACTCAATTGCCTGACCAGGACCAGACCAGCGTTTCCCGTAAACAGATGCTTGCTCGGCTTGATGTTTGCATGGGAGGTCGTGTCGCTGAAGAGCTAATTTTCGGAGAGAACGAAGTCACTTCTGGTGCATCCTCAGATCTCAGGCAAGCAACCAGTCTGGCAAGGGAAATGGTTACCAAATATGGCATGGGCAATGAAGTTGGACTAGTCACTCACGATTACAAAGATGATGGTAGGAGCATGAGCTCAGAGACTAGGCTTCTTATTGAGAAAGAGGTGAAGCAATTCCTGGAGAGGGCCTACAACAATGCAAAAACTATTCTGACCACTCACAACAAGGAGCTTCATGCACTTGCAAATGCCCTTCTGGAGCACGAGACACTTTCAGGAACTCAGATAAAGACATTGCTTGCCCAAGTTAGATCTCAGATGCTGCAGCAGCAGCAGCAGCAGCCACCCCAAACAATTGAAGCTCAGAGCAGTTTACAATCCAACACGGTGCCTCCATCATCCAGCAACCCGGCATCTGCTGCTGCCGCTGCTGCTGCCGCCACAGCTGCAGCAACAGCTACTGCTGCCGCCGCCAAGGCTAACAGTGCTCCAGTGGGATCTTAG 2145 0.4545 MALRLLVSQVARRQIKSVFATSYFSVNKFGDRAGNRLLGAQERFQSSYLSSIARRARDADEASEVAYLKELYHQNDPEAVIRVFESQPSLHNSPSALSEYVKALVKVDRLDESQLLKTLRRGMSNSVSEEETLAGLSALRNTRKSEKDNTIGTASNPIYMVARDGGNIKDQIWRTLRFIAVSFFMISGVGALIEDKGISKGLGINEEVQPSMESSTKFSDVKGVDEAKEELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRDLFSAARKRAPAIIFIDEIDAIGGKRNAKDQMYMKMTLNQLLVELDGFKQNEGIIVIGATNFPQSLDKALVRPGRFDRHVIVPNPDVKGRQQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLINIAAIKAAMDGAKAVSMADLEHAKDKILMGSERKSAVISAESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPDQDQTSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLRQATSLAREMVTKYGMGNEVGLVTHDYKDDGRSMSSETRLLIEKEVKQFLERAYNNAKTILTTHNKELHALANALLEHETLSGTQIKTLLAQVRSQMLQQQQQQPPQTIEAQSSLQSNTVPPSSSNPASAAAAAAAATAAATATAAAAKANSAPVGS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1934 714 Gene3D - 203 385 IPR027417 -
Gso17g1934 714 PANTHER METALLOPROTEASE M41 FTSH 14 686 - -
Gso17g1934 714 Gene3D Peptidase M41 460 657 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso17g1934 714 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 669 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso17g1934 714 Pfam AAA+ lid domain 407 450 IPR041569 -
Gso17g1934 714 SUPERFAMILY FtsH protease domain-like 466 650 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso17g1934 714 ProSitePatterns AAA-protein family signature. 355 373 IPR003960 GO:0005524|GO:0016887
Gso17g1934 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 479 IPR027417 -
Gso17g1934 714 Pfam ATPase family associated with various cellular activities (AAA) 255 384 IPR003959 GO:0005524|GO:0016887
Gso17g1934 714 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 14 686 - -
Gso17g1934 714 Gene3D - 386 459 - -
Gso17g1934 714 CDD AAA 222 384 - -
Gso17g1934 714 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 208 647 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso17g1934 714 SMART AAA_5 251 387 IPR003593 -
Gso17g1934 714 Pfam Peptidase family M41 466 645 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso17g1934 714 MobiDBLite consensus disorder prediction 654 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1934 Gso-Chr17 38476679 38484072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1934 56 647 Miscellaneous Gene Families AT5G53170 51.212 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1934 K08955 - gmx:100808349 1216.45