Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1932 ATGATCATGGAGATCAATGCATCCCCCGACAACATTAATTCAGTCAAGTACAACGTACATGAAAAACAGCCTTACCGAACTTGGTACCACTTTCAGCCCCCACAAAATTGGATGAATGATCCAAATGGACCAATGTACTACAAAGGAGTTTACCACTTTTTCTACCAACATAACCCTTATGCACCAACCTTTGGTAGGCATATGGTATGGGGTCATTCCGTATCCTATGATCTCATCAATTGGATTCATCTAAACCATATTCTTGAACCAAGTGAGTCCTATGACATTAATGGCTGTTATTCAGGCTCAATCACAACCCTCCCAGGGGAAAAACCTGTTATCATGTATACAGGGAGTGATACTAACAAACATCAAATTCAGAACTTGGCTATGCCAAAGAATCTATCAGACCCCTTCTTAAGGGAATGGGTGAAAGACCCCCAAAACCCTATCATGATTCCACCAAGTGGAATTGATGTGGAGGGTTTCAGAGACCCGACAACTGCATGGCAAGGAGGTGATGGAAAATGGAGAGTGATTATTGGTGCCAAAACGGGTGATGATGGGAAGGCTCTTCTCTACCATAGTGATGATTTTGTTAATTGGAAACTGCATCCCAATCCTTTGTATGCATCAGACAATACTGGAATGTTTGAGTGTCCAGATTTCTTTCCAGTGCACATAAGTGGCTCAAAGAGTGGGGTTGATACATCAATCCAAAACTCCAGTGTCAAGCATGTCTTGAAAATGAGTTATCAAAACAAACAACTAGAATACTATTTTCTTGGTGAATATTTTCCTGATCAGGAAAAGTTTATTCCTGATGCTGATTGGGCAAGAACTGGTTTGGACTTGATATTGGACCATGGAATGTTTTATGCTTCCAAGTCATTTTTTGACAATGCCAAGAAAAGAAGGATATTGTGGGGATGGTCAAAGGAGTGTGACACCACACAAGATGATTATGAGAAAGGATGGGCTGGTCTACAGAGTATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGTGGTTGATGCAGTGGCCAATTGAAGAGGTAGAAAAACTACGTGACAAACAAGTTAGCATAACGGGAGAGAAACTAATTGGTGGATCAACTATTGAAGTCTCTGGTATTACTGCATCACAAGTCGATGTAGAAGTGTTGTTTGAGCTACCTGAACTAGAGAATGCGGAGTGGCTAGATGAAAGTGAAGTTGATTCTCACTTGCTGTGTAGTGAAGAATATGCATCAAGAAGTGGCATAATAGGGCCATTTGGTTTGTTAGCTTTAGCATCTGAGGACCAAACAGAACACACTGCAATTTTCTTCAGAATATATAGAGCTCCCAATAGATATTTATGCCTCATGTGCAGTGACCAAAGCAGGTCTTCATTGAGGCAGGACCTTGATAAAACCCCATATGGAACAATCTTTGACATTGACCCTAATGTCAAGACGATTTCACTTAGAAGTTTGATTGACCGCTCCATTATTGAGAGTTTTGGGGAGAAAGGGAGAATTTGTATTACCAGTAGAGTTTATCCCTCGTTGGCTATTGACAAAGATGCACATCTTTATGTTTTCAACAATGGAAGCCAGAGTGTGGTGATCTCTGAACTGAATGCTTGGAGCATGAAGGAAGCAGAATTTAGTTAA 1659 0.4075 MIMEINASPDNINSVKYNVHEKQPYRTWYHFQPPQNWMNDPNGPMYYKGVYHFFYQHNPYAPTFGRHMVWGHSVSYDLINWIHLNHILEPSESYDINGCYSGSITTLPGEKPVIMYTGSDTNKHQIQNLAMPKNLSDPFLREWVKDPQNPIMIPPSGIDVEGFRDPTTAWQGGDGKWRVIIGAKTGDDGKALLYHSDDFVNWKLHPNPLYASDNTGMFECPDFFPVHISGSKSGVDTSIQNSSVKHVLKMSYQNKQLEYYFLGEYFPDQEKFIPDADWARTGLDLILDHGMFYASKSFFDNAKKRRILWGWSKECDTTQDDYEKGWAGLQSIPRQVWLDKSGKWLMQWPIEEVEKLRDKQVSITGEKLIGGSTIEVSGITASQVDVEVLFELPELENAEWLDESEVDSHLLCSEEYASRSGIIGPFGLLALASEDQTEHTAIFFRIYRAPNRYLCLMCSDQSRSSLRQDLDKTPYGTIFDIDPNVKTISLRSLIDRSIIESFGEKGRICITSRVYPSLAIDKDAHLYVFNNGSQSVVISELNAWSMKEAEFS* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1932 552 Pfam Glycosyl hydrolases family 32 C terminal 352 545 IPR013189 -
Gso17g1932 552 ProSitePatterns Glycosyl hydrolases family 32 active site. 30 43 IPR018053 GO:0004553|GO:0005975
Gso17g1932 552 CDD GH32_Fruct1-like 36 338 - -
Gso17g1932 552 SUPERFAMILY Arabinanase/levansucrase/invertase 21 350 IPR023296 -
Gso17g1932 552 Pfam Glycosyl hydrolases family 32 N-terminal domain 30 349 IPR013148 -
Gso17g1932 552 Gene3D - 363 546 - -
Gso17g1932 552 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 18 551 - -
Gso17g1932 552 Gene3D Glycosyl hydrolase domain; family 43 35 362 IPR023296 -
Gso17g1932 552 SUPERFAMILY Concanavalin A-like lectins/glucanases 349 548 IPR013320 -
Gso17g1932 552 SMART glyco_32 30 506 IPR001362 GO:0004553|GO:0005975
Gso17g1932 552 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 18 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1932 Gso-Chr17 38454669 38457740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1932 45 552 Glycoside Hydrolase AT5G11920 55.642 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1932 - K01193 gmx:100806753 1150.96