Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1931 ATGGAGATCAATGGAGAGGGTGCATCCCCACACAGCATAAATTCTATCAAGTTCAAGGTACCTGAGAAACAGCCTTATAGAACTTGGTACCACTTTCAACCCCCACAAAATTGGATGAACGATCCAAATGCACCTATGTACTACAAAGGAGTTTACCACTTTTTCTACCAACATAACCCCTATGCACCAACCTTTGGCGAGAAAATGGTGTGGGCTCACTCTGTGTCCTATGATCTCATCAATTGGATTCATCTGAATCATGCCATTGAACCAAGTGATTCCTATGACATCAACAGCTGCTGGTCAGGCTCAGCCACAATACTCCCAGGTGAAGAAGAACAACCTGTTATTTTGTACACAGGAATTGATAACAATAAATATCAAGTTCAGAACATGGCTATGCCAAAGGATCTATCAGACCCTTTCTTAAGGGAATGGGTGAAACACCCTCAGAACCCTGCCATGACACCACCAAGTGGTGTTGAAGTGAATAACTTCAGAGACCCTTCAACTGCTTGGCAGGGAAAGGATGGAAAATGGAGGGTAGTCATTGGTGCTCAAAATGGGGATGAAGGGAAGACAATTCTCTACCAAAGTGAGGATTTTGTTAATTGGAGAGTGGAATTGAACCCTTTTTTTGCAACAGATAACACTGGAGTTTGTGAGTGTCCAGATTTTTTTCCTGTGTCCATCAATAGCACAAATGGGGTGGATGCATCTGTCCAAAGTCAAAGTGTTAGACATGTCTTGAAGATAAGCTATCTACGTAGACATCAGGACTATTATTTTCTTGGTAAATATGTCTATGATGAGGGGAACTTTGTTCCTGATGTTAAATTCACTGGAACTAGTTCGGACTTAAGGCTTGACTATGGTAAGTTTTATGCTTCAAAGTCATTTTTTGACCATGCTAAGAACAGGAGGATATTGTGGGGGTGGGTGAACGAGTGTGACACTAGACAAAATGACATTGAGAAAGGATGGGCTGGTCTACAGTGTATTCCAAGGCAAGTTTGGCTTGATGAAAGTGGGAAGCAGTTGATGCAGTGGCCAATTGAAGAAATAGAAAAACTACGCGACAAACAAATTAGCATATTGGGGGAGAAACTGGTTGGTGGATCAATTATTGAAGTCTCAGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTGTTTGAGCTACCCGAACTAGAGAATGTGGAGTGGCTAGATGAAAGTGAAGTTGATCCCCACTTGCTGTGTAGTGAAGAGTATGCAACAAGAAGTGGCACAATAGGGCCATTTGGTTTGTTAGCTTTAGCTTCTGAGGACCAAACAGAACACACTGCAGTGTTCTTCAGAATATATAGAGCTTCCAATAGATATATATGCTTCATGTGCAGTGACCAAAGCAGGTCTTCATTGCGGCAGGACCTTGATAAAACCACATATGGAACAATCTTTGACATTGACCCTAATGTCAAAACGATTTCACTTAGAAGTTTGATTGACCGCTCAATTATTGAGAGTTTTGGGGAGAAAGGGAGAATTTGTATTACCAGTAGAGTTTATCCCTCGATGTCTATAGACAAAAATGCACATCTTTATGTGTTCAACAATGGAAGCCAGAGTGTGGTGATCTCTGAACTGAATGCTTGGAGCATGAAGCAAGCAGAATTTGGCCAAGAAGAAAGCATAAATAAGCAGTAG 1689 0.4162 MEINGEGASPHSINSIKFKVPEKQPYRTWYHFQPPQNWMNDPNAPMYYKGVYHFFYQHNPYAPTFGEKMVWAHSVSYDLINWIHLNHAIEPSDSYDINSCWSGSATILPGEEEQPVILYTGIDNNKYQVQNMAMPKDLSDPFLREWVKHPQNPAMTPPSGVEVNNFRDPSTAWQGKDGKWRVVIGAQNGDEGKTILYQSEDFVNWRVELNPFFATDNTGVCECPDFFPVSINSTNGVDASVQSQSVRHVLKISYLRRHQDYYFLGKYVYDEGNFVPDVKFTGTSSDLRLDYGKFYASKSFFDHAKNRRILWGWVNECDTRQNDIEKGWAGLQCIPRQVWLDESGKQLMQWPIEEIEKLRDKQISILGEKLVGGSIIEVSGITASQADVEVLFELPELENVEWLDESEVDPHLLCSEEYATRSGTIGPFGLLALASEDQTEHTAVFFRIYRASNRYICFMCSDQSRSSLRQDLDKTTYGTIFDIDPNVKTISLRSLIDRSIIESFGEKGRICITSRVYPSMSIDKNAHLYVFNNGSQSVVISELNAWSMKQAEFGQEESINKQ* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1931 562 Pfam Glycosyl hydrolases family 32 C terminal 354 547 IPR013189 -
Gso17g1931 562 CDD GH32_Fruct1-like 37 340 - -
Gso17g1931 562 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 21 557 - -
Gso17g1931 562 Pfam Glycosyl hydrolases family 32 N-terminal domain 31 351 IPR013148 -
Gso17g1931 562 ProSitePatterns Glycosyl hydrolases family 32 active site. 31 44 IPR018053 GO:0004553|GO:0005975
Gso17g1931 562 SUPERFAMILY Arabinanase/levansucrase/invertase 23 352 IPR023296 -
Gso17g1931 562 Gene3D Glycosyl hydrolase domain; family 43 36 363 IPR023296 -
Gso17g1931 562 SMART glyco_32 31 508 IPR001362 GO:0004553|GO:0005975
Gso17g1931 562 SUPERFAMILY Concanavalin A-like lectins/glucanases 351 550 IPR013320 -
Gso17g1931 562 Gene3D - 364 548 - -
Gso17g1931 562 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 21 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1931 Gso-Chr17 38445550 38448806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1931 41 553 Glycoside Hydrolase AT1G55120 53.346 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1931 - K01193 gmx:100806220 1168.3