Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1916 ATGAAGCTTTGGTGTTGTCCATGGCTATGCTTCACTGAAGAAGAAGAGGAAGAAGAAGAAGAAGAGCGCAAATTTCCCAAACCTATGAAGGAAGGAGACATCATTTTCGGAAACGTCGTCGTTTCCGACGACGACGACGGCGACGGAGACGGAAACGATACCCGCGGCGACGATAAGCAATTCGCGATGGTCCGCGCCGATGTATTGGGCTCGTGGCCCGGCGAGAGCAGCTCCACCGCCGCCGCCGAGTGTTTGGATATCGCCGCCGCCGGCGAGAGCCGCGATTTGAGCAACAAGCGCGCCAAGTTCTACGCCGACTTCGAGGAGCATCACTTTTCAACCGGGAAGTGCAGTGCATCTAATGAATACGTTGATTATAACTTTAGTATTAAAGGCACTCTTCGACCCAACGGTGAGACTTGCTATGATGCATTTTCATTGATGGGTGTTGTTGAAGAGAATAGTAGTGGCTTCGATTCCCGCATTGTGAAAGAGGGTGGTGAGGGAGATGATAGCGATATCTCGAAAGTGGAAGAAGATGTAGAGGTCAGAATGGATCTCACCGATGACTTGTTGCATATGGTTTTTTCGTTTTTGGATCATCCCAATCTCTGCAAAGCTGCCAGGGTTTGTAAGCAGTGGCGAGGTGCCAGTGCTCATGAAGATTTCTGGAAAAGTTTGAATTTTGAAGATCGGAACATATCTGTAGAACAATTTGAGGACATGTGTAGCCGTTATCCTAATGCCACAGCAGTGAGCTTATCTGGTTCTGCTATTTACTTGCTTGTCATGAAGGCCATCTGTTCATTAAGGAATCTAGAGTTTCTAACATTAGGAAGGGGACAGATAGCTGATACTTTTTTCCATGCTTTAGCTGATTGTTCTATGTTGAGAAGATTGAATATCAATGATTCTATACTTGGCAACGGCATTCAGGAGATAACTATTAATCATGACAGATTGTGTCATCTTCAATTAACAAAATGCCGTGTGATGCGAATAGCAGTCAGGTGCCCACAACTTGAAACTATGTCGTTGAAGCGCAGTAACATGGCACAGGTTGTGCTTAATTGTCCACTTTTGCATGAGCTTGATATTGGCTCTTGCCACAAACTTCCTGATGCCGCGATACGAGCTGCTGCAACTTCATGCCCTCAACTGGTCTCACTGGACATGTCAAATTGTTCATGTGTCAGTGATGAAACTCTGCGTGAAATAGCATTGAGTTGTGCTAACCTTAGTTTTCTTGATGCATCATACTGCTCAAACATATCTTTGGAGTCTGTTAGACTGCCAATGTTAACAGTTTTAAAGCTCCATAGCTGCGAAGGCATTACTTCTGCCTCAATGGCTGCAATAGCTCATAGTTATATGTTGGAGGTTTTGGAGCTTGACAATTGCAGCCTGTTGACTTCAGTGTCTTTGGATCTTCCTCGTTTGCAGACTATTAGATTGGTACACTGTCGCAAATTTGCTGATTTGAACATGAGAACTATGATGCTTTCTTCTATACTGGTATCAAACTGCCCTGCACTCCATCGTATCAACATCACTTCAAATTCACTTCAAAAATTAGCCTTGCAAAAGCAAGATAGTTTAACCATGCTAGCTCTGCAATGCCAATCTTTACAAGAAGTGGACCTCTCAGAGTGTGAATCTTTGACAAACTCTATATGTGATGTTTTTAGTGATGGTGGAGGATGCCCTATGCTGAAATCACTAGTTCTTGATAATTGTGAGAGCTTGACATCCGTTCGGTTCATCAGCACCTCTTTGGTCAGTCTTTCCCTTGGTGGTTGTCGGGCAATTACTTCTCTTGAGCTCACATGCCCTAACCTTGAGAAAGTCATTTTGGATGGCTGTGATCATTTGGAAAGAGCATCCTTTTGTCCTGTTGGCCTTCGGTCTCTCAATTTAGGAATATGTCCAAAATTGAATATACTCAGCATAGAAGCCATGTTTATGGTCTCACTTGAGTTGAAAGGATGTGGTGTTCTGTCCGAGGCATCACTTAATTGTCCTCTCTTGACATCTTTGGATGCTTCCTTTTGCAGCCAACTCACTGATGAATGCTTGTCTGCAACAACGGCCTCCTGCCCATTGATTGAGTCATTAATATTGATGTCATGCCCATCGATTGGTTTAGATGGACTTTGTTCTTTGCGTTGGCTCCCTAATTTAACCCTGCTGGATTTATCGTACACTTTTTTGGTCAATTTGCAGCCTATTTTTGAGTCTTGTTCACAGCTAAAGGTATTAAAGTTACAGGCATGCAAATATCTCACTGACTCATCACTTGAGCCTCTTTACAAAGGTGCTTTACCAGTACTTCAGGAGTTGGACTTGTCTTATGGAACACTGTGTCAGTCGGCCATAGAGGAGCTTCTTTCTTGCTGCACACACCTTACACGTGTGAGCTTGAATGGCTGTGCCAATATGCATGATTTAAACTGGGGATGCAGTCGTGCGCATACTGCTGAATTGCCTGGTGTAAATGTCCTACCCATTGCAAGTTCCCCTGAAAATGTCCTCGAGTTAAGTGAGCAACCCATCCGGTTACTGCAGAACCTAAACTGTGTGGGATGTCCGAACATTCGGAAGGTTTTCATTCCATCAACGGCACATTGTTCCCGTTTGTTATTTTTAAACCTTTCTCTATCAGCTAATTTGAAGGAAGTTGATGTAGCTTGTCTCAACCTAAGCTGGCTTAATCTAAGCAATTGTTCCTCTTTGGAAGTTTTGAAGCTAGAGTGTCCGAGATTGACCAGTCTATTCCTTCAGTCTTGCAACATTAATGAGGAAGCTGTTGAGGCTGCTATATCAAAATGCACTATGCTGGAGACTCTTGATGTTCGCTTCTGTCCAAAGATAAGCTCAATGAGCATGGGAAGATTGCGTGCAGCATGTTCTAGTTTGAAGCGTATATTCAGCAGCTTGTCAGCTTCATAA 2949 0.4378 MKLWCCPWLCFTEEEEEEEEEERKFPKPMKEGDIIFGNVVVSDDDDGDGDGNDTRGDDKQFAMVRADVLGSWPGESSSTAAAECLDIAAAGESRDLSNKRAKFYADFEEHHFSTGKCSASNEYVDYNFSIKGTLRPNGETCYDAFSLMGVVEENSSGFDSRIVKEGGEGDDSDISKVEEDVEVRMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRGASAHEDFWKSLNFEDRNISVEQFEDMCSRYPNATAVSLSGSAIYLLVMKAICSLRNLEFLTLGRGQIADTFFHALADCSMLRRLNINDSILGNGIQEITINHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIALSCANLSFLDASYCSNISLESVRLPMLTVLKLHSCEGITSASMAAIAHSYMLEVLELDNCSLLTSVSLDLPRLQTIRLVHCRKFADLNMRTMMLSSILVSNCPALHRINITSNSLQKLALQKQDSLTMLALQCQSLQEVDLSECESLTNSICDVFSDGGGCPMLKSLVLDNCESLTSVRFISTSLVSLSLGGCRAITSLELTCPNLEKVILDGCDHLERASFCPVGLRSLNLGICPKLNILSIEAMFMVSLELKGCGVLSEASLNCPLLTSLDASFCSQLTDECLSATTASCPLIESLILMSCPSIGLDGLCSLRWLPNLTLLDLSYTFLVNLQPIFESCSQLKVLKLQACKYLTDSSLEPLYKGALPVLQELDLSYGTLCQSAIEELLSCCTHLTRVSLNGCANMHDLNWGCSRAHTAELPGVNVLPIASSPENVLELSEQPIRLLQNLNCVGCPNIRKVFIPSTAHCSRLLFLNLSLSANLKEVDVACLNLSWLNLSNCSSLEVLKLECPRLTSLFLQSCNINEEAVEAAISKCTMLETLDVRFCPKISSMSMGRLRAACSSLKRIFSSLSAS* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1916 982 Pfam F-box-like 189 229 IPR001810 GO:0005515
Gso17g1916 982 Gene3D Ribonuclease Inhibitor 180 428 IPR032675 -
Gso17g1916 982 ProSiteProfiles F-box domain profile. 181 227 IPR001810 GO:0005515
Gso17g1916 982 SMART LRR_CC_2 918 942 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 610 635 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 384 409 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 431 456 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 477 502 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 747 772 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 568 598 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 943 978 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 358 383 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 540 564 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 294 317 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 699 724 IPR006553 -
Gso17g1916 982 SMART LRR_CC_2 673 698 IPR006553 -
Gso17g1916 982 SUPERFAMILY L domain-like 522 651 - -
Gso17g1916 982 PANTHER OS10G0396666 PROTEIN 93 943 IPR044703 GO:0010252|GO:1905393
Gso17g1916 982 SUPERFAMILY RNI-like 610 976 - -
Gso17g1916 982 Gene3D Ribonuclease Inhibitor 837 980 IPR032675 -
Gso17g1916 982 Gene3D Ribonuclease Inhibitor 506 632 IPR032675 -
Gso17g1916 982 PANTHER OS10G0396666 PROTEIN 93 943 - -
Gso17g1916 982 SUPERFAMILY F-box domain 186 217 IPR036047 GO:0005515
Gso17g1916 982 SMART fbox_2 187 227 IPR001810 GO:0005515
Gso17g1916 982 Gene3D Ribonuclease Inhibitor 740 834 IPR032675 -
Gso17g1916 982 Gene3D Ribonuclease Inhibitor 429 505 IPR032675 -
Gso17g1916 982 Gene3D Ribonuclease Inhibitor 643 739 IPR032675 -
Gso17g1916 982 SUPERFAMILY RNI-like 209 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1916 Gso-Chr17 38176633 38183966 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1916 - - gmx:100817100 1914.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0866 14 9808940 9816777 Gso17g1916 17 38176633 38183966 GST