Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1834 ATGATAAACATGGCCCTCCAAAGACTTAGCATCACACTCCTTTTGGTTCTATTCATGAGTCTCCATTCTCAAGCTAGTGTTGAGTCTTCTAATTGGAAATATGCACCAAACATTGGAAGTGTTAGAGCTGCGTATTGGCCTGCGGGTGATGACCTTTCGCCCTCTTCCATTGACACAAAATACTTCACTCATATCTACTATGCCTTTATCCAACAAGACCCTCAACTTTTTCACCTTAGTGTCACCGAATTTGATGAAAAATGGATACCAAAATTCATCGATGGACTCCGCTACCGTTACCCGCCGGTGAAAACTCTCTTGTCGATTGGAGGAGGTGGTAGCAACTCAACCGCATTCTCCCTCATGGCTAGCAACAAACACACACGACAAGTGTTCATAAACTCCACCATCCACGTGGCGCGCCAATACGGGTTCAATGGTCTCGATTTAGATTGGGAGTTCCCAGATGATGAACACGATATGTCGAACCTTGGTGTTTTGTTTCAAGAGTGGCACCAAGCTTTGGTGGTGGAAGCAAAAATAAGTAGAAAACCGCGGTTGCTTTTGACAGCCGCAGTTTACTATGCTTCCACCATCAAACTCATCGGTGATGGACCAAGATCATATCCAGCCCAAGCCATTCGGAACTACTTGGATTGGGCAAGTCCTATGTGCTTTGATTACCATGGGACTTGGGACAATTTTACAGGCTTTAATGCAGCATTATATGATCCAAAGTCCAACATAAGTACCCAATATGGGATCGGATCTTGGATCGAATCGGGTGTGCCCACCCAAAAGTTGGTTATGGGTTTACCGTTATATGGTCGGGCATGGGCGCTCCGAGACCCGAACGTTAATGGGGTTGAGGCAGAAGCAGTTGGGAAAGCCACGGATACAGATGGTACTATGGACTATGATGAAATTTTGGTGTTTAACAAAGAGAATGGTGCCACTGTGGTGTATGATGATGTAGCTGTGGCTTTCTACTCTTATGCGGGTACAACTTGGATTGGGTACGATGATGGGCCATCCATAAAGAAAAAGGTTCAGTTTGCAAGGTTTACGGGCTTGAAGGGCTATTTCTTTTGGGCTGTTGGGAAGGATAAGGATTGGACCATCTCAAGACAAGCTTCAAATGCATGGAGACACTGA 1155 0.4537 MINMALQRLSITLLLVLFMSLHSQASVESSNWKYAPNIGSVRAAYWPAGDDLSPSSIDTKYFTHIYYAFIQQDPQLFHLSVTEFDEKWIPKFIDGLRYRYPPVKTLLSIGGGGSNSTAFSLMASNKHTRQVFINSTIHVARQYGFNGLDLDWEFPDDEHDMSNLGVLFQEWHQALVVEAKISRKPRLLLTAAVYYASTIKLIGDGPRSYPAQAIRNYLDWASPMCFDYHGTWDNFTGFNAALYDPKSNISTQYGIGSWIESGVPTQKLVMGLPLYGRAWALRDPNVNGVEAEAVGKATDTDGTMDYDEILVFNKENGATVVYDDVAVAFYSYAGTTWIGYDDGPSIKKKVQFARFTGLKGYFFWAVGKDKDWTISRQASNAWRH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1834 384 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 40 384 IPR001223 GO:0005975
Gso17g1834 384 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Gso17g1834 384 PANTHER CHITINASE 24 383 - -
Gso17g1834 384 SUPERFAMILY Chitinase insertion domain 275 340 IPR029070 -
Gso17g1834 384 SUPERFAMILY (Trans)glycosidases 41 379 IPR017853 -
Gso17g1834 384 SMART 2g34 40 369 IPR011583 GO:0008061
Gso17g1834 384 Pfam Glycosyl hydrolases family 18 44 369 IPR001223 GO:0005975
Gso17g1834 384 Gene3D Glycosidases 55 370 - -
Gso17g1834 384 Gene3D - 274 340 IPR029070 -
Gso17g1834 384 PANTHER CLASS V CHITINASE CHIT5A 24 383 - -
Gso17g1834 384 CDD GH18_plant_chitinase_class_V 41 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1834 Gso-Chr17 36724212 36726515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1834 41 382 Glycoside Hydrolase AT4G19810 44.186 1.45e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1834 K01183 - gmx:100787511 796.578