Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1784 ATGCAATTAACAAAGCTATCATCATCTGCTATCACCACCACCACGTTCTTCCAAGTCCACCTCCCTCCCCACACCACAAAACGACGCGTCGCAGAGCAAACCATCTTGTCCCTCCTCACCACCTGCGACACGCTCACCACCTTCACGCAAATCCATTCCCTCATCCTCAAACTCGGCCTCCACCACAACCCACTCGTCCTCACGAAGTTCGCCGCCACCTCCTCCCACTTCAACGCCGTCCACTACGCCTCCTCCGTCCTCTTCCCAAATGACCAAACCACCCCTCCCCCTTCCCACGACGCCTTCCTCTTCAACACGCTCATCAGGGCCTTCGCCCAAACGACGCACTCCAAGCCCCACGCCCTGCGTTTTTACAACACCATGAGACGGCACGCTGTTTCGCCCAACAAGTTCACATTCCCTTTCGTTCTCAAGGCCTGCGCCGGAATGATGAGGTTGGAGTTGGGGGGAGCGGTGCATGCCTCGATGGTGAAGTTTGGGTTCGAAGAGGATCCGCACGTGCGGAACACTTTGGTTCACATGTATTGTTGCTGCTGTCAGGATGGGTCGTCTGGGCCTGTGTCTGCCAAGAAGGTGTTTGATGAAAGTCCTGTGAAGGATTCGGTCACGTGGAGCGCCATGATTGGAGGGTACGCGCGTGCGGGAAATTCTGCACGTGCGGTTACGTTGTTTAGAGAGATGCAGGTTACAGGGGTGTGTCCTGATGAGATCACCATGGTTTCTGTTTTGTCTGCGTGTGCTGATTTGGGTGCACTTGAGTTGGGGAAGTGGTTGGAGTCTTATATTGAGAGGAAGAACATAATGAGGTCTGTGGAGTTGTGTAATGCACTGATAGACATGTTTGCCAAGTGTGGTGATGTTGATAGAGCTGTGAAAGTGTTCAGGGAAATGAAAGTGAGGACCATAGTTTCGTGGACTTCGATGATTGTTGGTTTGGCGATGCACGGTCGCGGATTGGAGGCTGTTTTGGTGTTTGATGAGATGATGGAACAAGGGGTGGATCCTGATGATGTTGCTTTCATTGGGGTGCTCTCTGCATGTAGTCACTCAGGGCTGGTTGATAAGGGACATTACTATTTCAATACAATGGAGAATATGTTCAGCATTGTGCCAAAGATTGAACACTATGGATGCATGGTTGATATGTTGAGTAGAGCAGGACGTGTGAATGAGGCTTTGGAGTTTGTTCGAGCCATGCCGGTTGAGCCAAACCAGGTCATATGGAGAAGCATAGTCACTGCTTGCCATGCCCGCGGGGAGCTCAAGCTCGGTGAGAGCGTGGCGAAGGAGCTGATCAGGCGCGAGCCATCGCACGAGTCTAACTATGTGCTGCTGTCGAATATTTACGCAAAATTGCTGCGCTGGGAGAAGAAGACCAAGGTTAGGGAGATGATGGATGTGAAGGGGATGAGGAAGATTCCAGGGAGCACCATGATTGAGATGAATAATGAAATATATGAGTTTGTTGCAGGAGATAAGTCACATGATCAGTACAAGGAGATATATGAAATGGTGGAAGAGATGGGAAGGGAGATAAAGAGAGCAGGGTATGTGCCTACAACATCACAAGTATTGCTTGACATTGATGAAGAAGATAAGGAAGATGCTTTGTATAGACACAGTGAAAAGCTTGCTATAGCTTTTGCTCTTCTGAGTACGCCCCCTGGAACGCCAATTAGAATTGTGAAGAACTTGCGCGTCTGCGAAGATTGTCACTCTGCTACTAAGTTCATATCTAAGGTTTATAACCGAGAGATTGTGGTGAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGTTTATGCTCCTGCGGAGACTTCTGGTAA 1848 0.4984 MQLTKLSSSAITTTTFFQVHLPPHTTKRRVAEQTILSLLTTCDTLTTFTQIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1784 615 Pfam E+ motif 492 519 IPR046849 -
Gso17g1784 615 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 601 - -
Gso17g1784 615 Gene3D Tetratricopeptide repeat domain 269 374 IPR011990 GO:0005515
Gso17g1784 615 Pfam E motif 427 487 IPR046848 -
Gso17g1784 615 TIGRFAM PPR: pentatricopeptide repeat domain 280 306 IPR002885 -
Gso17g1784 615 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Gso17g1784 615 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Gso17g1784 615 Pfam PPR repeat family 100 148 IPR002885 -
Gso17g1784 615 Pfam PPR repeat family 308 355 IPR002885 -
Gso17g1784 615 Pfam PPR repeat family 206 254 IPR002885 -
Gso17g1784 615 PANTHER - 34 601 - -
Gso17g1784 615 Gene3D Tetratricopeptide repeat domain 97 268 IPR011990 GO:0005515
Gso17g1784 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Gso17g1784 615 Gene3D Tetratricopeptide repeat domain 375 445 IPR011990 GO:0005515
Gso17g1784 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Gso17g1784 615 Pfam PPR repeat 382 406 IPR002885 -
Gso17g1784 615 Pfam PPR repeat 281 307 IPR002885 -
Gso17g1784 615 Pfam DYW family of nucleic acid deaminases 523 615 IPR032867 GO:0008270
Gso17g1784 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Gso17g1784 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 135 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1784 Gso-Chr17 34852211 34856069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1784 34 615 Glycoside Hydrolase AT3G49170 35.533 7.62e-126 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1784 - - gmx:100778415 1239.17