Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso17g1737 | ATGCTCTCTCGCTCTCTCAGACCTCGTCACATACTCTCCTCCCTCCGTTCATTACCCTTTACCCTAAACCCAAACCCAAACCCTAACCCTAACCCTAACCGAACCCCTCCAATCCGAGCCTCCACACACCGTCCCTTCTCTTCTTCATGGCTGTCCGAACCTGGAAACCCAATCATCCAATGGCCCTCACTACCCCCACCAAAACCCACTCCGAACCCAAACCCAAACCCAAACCTAAACCCCACACCCGACCCTCCCTCTCCCAACCCAAACGCTCTCTCCGTCATCTCCAACCTCTTCGCCGACCCTTCCCTCTCGCCCGGCCCGGCCCTCCACGCCGAGCTCGACCGGGCTGGGATCGAGCCGGACCCGGCCCTTCTGCTCGCCGTGTTCGATCGCTTCGGCTCGTCGCCCAAGCTGCTGCACTCGCTCTTCCTCTGGGCCCAGACGCGGCCCGCCTTCAGGCCCGGCCCCAAGCTCTTTGACGCCGTAGTCAACGCGCTCGCGAAGGCGAGGGAGTTTGACGCCGCGTGGAAACTTGTTCTCCATCACGCCGAGAAAGACGGGGAAGAAGAAGGAGAAAAAGAAAGGTTGGTTTCCGTTGGAACCTTCGCTATCATGATTCGGCGCTACGCTCGTGCAGGTATGTCCAAACTTGCAATTAGAACATATGAGTTTGCCAGAAATAACAAGTCAATTGTGGATTCTGGCTCAGAAATGAGTTTATTGGAGATATTGATGGATTCACTTTGTAAAGAAGGGTCTGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAAAAAGGAGTTGGACTTAAGTTGGGTTCCTTCTATTCGGGTTTATAACATAATGTTAAATGGATGGTTTCGATTGCGGAAACTCAAGCAGGGAGAGAGACTTTGGGCAGAGATGAAGGAGAATATGAGACCCACTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGAATGCGCCGTGTCGAAAAGGCACTTGAAATGGTTGGTGATATGACCAAAGAAGGAATTGCACCAAATGCAATTGTGTATAATCCAATAATCGATGCACTGGCCGAAGCTGGAAGATTCAAAGAGGCATTGGGTATGTTGGAACGTTTTCATGTTTTGGAAATAGGCCCTACTGATTCAACATACAATTCTCTGGTAAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTCCTCCCAAGTGCTACCACTTATAACTACTTTTTTAGGTACTTTTCAAGATGTAGAAAAATCGAGGAGGGGATGAACCTGTATACAAAGTTGATTCAATCTGGTTATACCCCAGATCGGTTAACTTACCATCTTCTGGTGAAGATGTTATGTGAAGAGGAGAAGTTGGACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCATAATGGATATGACATGGACTTGGCTACGAGTACCATGTTAGTTCACTTGCTTTGCAAAGTGCGTAGGTTGGAAGAGGCTTTTGTGGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTGACTTTCCAGAGAATGAAAGCTGATTTAAAGAAACAAGGTATGACTGAAATGGCTCAAAAACTTTGCAAGTTGATGTCTTCTGTTCCCTATTCTCCGAATTTGCCAAATACTTATGGTGAAGTCAGAGAAGATGCATATGCACGAAGAAAATCTATAATTCGGAAAGCCAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGACCCTAGTGAACTTCGTAAGCATAGAAGTTCATCAGAAAATACTGTCTCAAGCACAAACAGTTTGATAGAGGATATTGAGAGAAAAAGAAATACAGGATGA | 1869 | 0.4676 | MLSRSLRPRHILSSLRSLPFTLNPNPNPNPNPNRTPPIRASTHRPFSSSWLSEPGNPIIQWPSLPPPKPTPNPNPNPNLNPTPDPPSPNPNALSVISNLFADPSLSPGPALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGPKLFDAVVNALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSKLAIRTYEFARNNKSIVDSGSEMSLLEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNGWFRLRKLKQGERLWAEMKENMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTFQRMKADLKKQGMTEMAQKLCKLMSSVPYSPNLPNTYGEVREDAYARRKSIIRKAKAFSDMLKDCKDPSELRKHRSSSENTVSSTNSLIEDIERKRNTG* | 623 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso17g1737 | 622 | Pfam | PPR repeat | 489 | 517 | IPR002885 | - | |
| Gso17g1737 | 622 | Pfam | PPR repeat | 279 | 306 | IPR002885 | - | |
| Gso17g1737 | 622 | Pfam | PPR repeat | 245 | 263 | IPR002885 | - | |
| Gso17g1737 | 622 | Gene3D | Tetratricopeptide repeat domain | 374 | 615 | IPR011990 | GO:0005515 | |
| Gso17g1737 | 622 | MobiDBLite | consensus disorder prediction | 17 | 95 | - | - | |
| Gso17g1737 | 622 | Pfam | PPR repeat family | 382 | 425 | IPR002885 | - | |
| Gso17g1737 | 622 | Pfam | PPR repeat family | 309 | 357 | IPR002885 | - | |
| Gso17g1737 | 622 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 485 | 519 | IPR002885 | - | |
| Gso17g1737 | 622 | MobiDBLite | consensus disorder prediction | 59 | 90 | - | - | |
| Gso17g1737 | 622 | MobiDBLite | consensus disorder prediction | 590 | 622 | - | - | |
| Gso17g1737 | 622 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 106 | 619 | - | - | |
| Gso17g1737 | 622 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 380 | 414 | IPR002885 | - | |
| Gso17g1737 | 622 | TIGRFAM | PPR: pentatricopeptide repeat domain | 347 | 380 | IPR002885 | - | |
| Gso17g1737 | 622 | TIGRFAM | PPR: pentatricopeptide repeat domain | 490 | 519 | IPR002885 | - | |
| Gso17g1737 | 622 | TIGRFAM | PPR: pentatricopeptide repeat domain | 312 | 346 | IPR002885 | - | |
| Gso17g1737 | 622 | TIGRFAM | PPR: pentatricopeptide repeat domain | 383 | 415 | IPR002885 | - | |
| Gso17g1737 | 622 | TIGRFAM | PPR: pentatricopeptide repeat domain | 279 | 306 | IPR002885 | - | |
| Gso17g1737 | 622 | Gene3D | Tetratricopeptide repeat domain | 302 | 373 | IPR011990 | GO:0005515 | |
| Gso17g1737 | 622 | Gene3D | Tetratricopeptide repeat domain | 117 | 263 | IPR011990 | GO:0005515 | |
| Gso17g1737 | 622 | PANTHER | LEAF PROTEIN-LIKE | 106 | 619 | - | - | |
| Gso17g1737 | 622 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 415 | 449 | IPR002885 | - | |
| Gso17g1737 | 622 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 450 | 484 | IPR002885 | - | |
| Gso17g1737 | 622 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 310 | 344 | IPR002885 | - | |
| Gso17g1737 | 622 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 345 | 379 | IPR002885 | - | |
| Gso17g1737 | 622 | MobiDBLite | consensus disorder prediction | 36 | 56 | - | - | |
| Gso17g1737 | 622 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 276 | 306 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso17g1737 | Gso-Chr17 | 33568122 | 33571539 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso17g1737 | 245 | 584 | Glycosyltransferase | AT1G05670 | 25.532 | 3.15e-37 | 145 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso17g1737 | - | - | gmx:100793484 | 1147.11 |