Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1679 ATGATGCCCTTCCTCGCCTTTCGTCCCTCCCGCTACCACACCAAACTCACGAGAAAGAAAGAAATAAGTAGAATTTTGGATGAGGTTGAGGTTGCGAATAAGCATTTCGGGAAGCTGAACACGATTGTGATGAACGCGGTGGTGGAGGCTTGTGTTCGATGCGGTGACATCGATTCGGCGATTAGAATATTTGATGGGATGAAAAAACGCGATGGTTGTGGTGTGGATACTGTCACCTATGCCACGCTTTTGAAGGGATTAGGCGAGGCACGAAGAGTTGACGAGGCTTTTGAATTGCTTGAAACTGTGGAAAATGGTACTGTCATGGGAAGTCCAAACTTGTCAGCTCCATTGATCTTTGGTCTGCTAAATGCCTTGATCAAAACAGGAGACTTGCGTCGTGCAAATGGTCTCCTTGCCTGTTATGGTTTTGTGCTTCGTGAAGGTGACAACTTTCCAGTCTCAGTATACAACATACTAATGAAGGGCTACATAAACTCAGGTTGTCCACACACTGCAATAAACATGCTCAATGAAATTTTACGTCAAGGCATAATGCCTGATAGGCTCACATATAACACACTAATTTTAGCATGTGTCGAGAGTGGAAAGTTGGATGCTGCAATGCAATTTTTTGGGGAAATGAAGGGCGAAGCACAGAAGTTCGTCAATGATGATCTATTTCCAGATATTGTTACATATACAACAATGCTTAAGGGTTTTGGGCGGATGAAGGATCTTGCTTCAGTTCTGAAAATAGTGCTGGAAATGAAATCTTGTCGTGAATTATACATTGATAGAACTGCTTACACTGAAATAGTTGATGTTTTTCTAAAATGTGGCTCAGTTAAGGGTGCTCTGTGTATTTTTGGAGAAATATTGAAGCAGGCTGGTCTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTCTTGGAGATTATGATCTAGTTAAAAAATTGCATAAACGGATTTGGCCAGATTCAGCAGGAACCATATTATTAGTTGCTCAAGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGCCAGGTTAATGTTGCCATTAAAACTCTTACTGAGATTGTTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGGGGCATGGTTGCTTATTGTATTGAGGCGATGTTGGGATTCTCAAAGTCCTTATTCAGTCCTCACTTACTTCCCCAGGTTTCACCTTCTGAACCGGTTGAGAATTATATGATACAATTTGAAGCAACACGGCCACTACAAGGTACCATAAAACTGAGGAAAGTAGTTATGCGTTTTTTTCATGAAGCAGTTGTTCCTATTGTAGATGAATGGGAAAGTTGTACAGGGCTGTTCCATCGTGAAGACTGCAACCAGTTGGATGCTCCACTTACAACAATGATGAGAAGCCCTCCTCCCATTGTTACGACTTCAACATCTGTTGGTTATGTAGTTGATTTAATTTTAGAGAAACGATACCCAATGGTTATTGTCGTAAATTACAGAAATTCATATGCTACTACTCAATACAGCTCTAGAGCAGTTGGAGTTTTTACATCAGACCAATTGAGTAGGTTTATCACACCTGTATCTCAAGTAAAAGGGACACACCTTTCAGCCTACAAAAGGTAA 1665 0.4168 MMPFLAFRPSRYHTKLTRKKEISRILDEVEVANKHFGKLNTIVMNAVVEACVRCGDIDSAIRIFDGMKKRDGCGVDTVTYATLLKGLGEARRVDEAFELLETVENGTVMGSPNLSAPLIFGLLNALIKTGDLRRANGLLACYGFVLREGDNFPVSVYNILMKGYINSGCPHTAINMLNEILRQGIMPDRLTYNTLILACVESGKLDAAMQFFGEMKGEAQKFVNDDLFPDIVTYTTMLKGFGRMKDLASVLKIVLEMKSCRELYIDRTAYTEIVDVFLKCGSVKGALCIFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKKLHKRIWPDSAGTILLVAQEEADHLLMEAALNAGQVNVAIKTLTEIVSRWKGISWTSRGGMVAYCIEAMLGFSKSLFSPHLLPQVSPSEPVENYMIQFEATRPLQGTIKLRKVVMRFFHEAVVPIVDEWESCTGLFHREDCNQLDAPLTTMMRSPPPIVTTSTSVGYVVDLILEKRYPMVIVVNYRNSYATTQYSSRAVGVFTSDQLSRFITPVSQVKGTHLSAYKR* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1679 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 301 IPR002885 -
Gso17g1679 554 Pfam PPR repeat family 40 87 IPR002885 -
Gso17g1679 554 Pfam PPR repeat family 154 199 IPR002885 -
Gso17g1679 554 Gene3D Tetratricopeptide repeat domain 113 221 IPR011990 GO:0005515
Gso17g1679 554 TIGRFAM PPR: pentatricopeptide repeat domain 78 101 IPR002885 -
Gso17g1679 554 TIGRFAM PPR: pentatricopeptide repeat domain 156 188 IPR002885 -
Gso17g1679 554 TIGRFAM PPR: pentatricopeptide repeat domain 191 216 IPR002885 -
Gso17g1679 554 TIGRFAM PPR: pentatricopeptide repeat domain 44 76 IPR002885 -
Gso17g1679 554 TIGRFAM PPR: pentatricopeptide repeat domain 232 260 IPR002885 -
Gso17g1679 554 Gene3D Tetratricopeptide repeat domain 12 107 IPR011990 GO:0005515
Gso17g1679 554 SUPERFAMILY CBS-domain pair 418 514 IPR046342 -
Gso17g1679 554 Gene3D Tetratricopeptide repeat domain 222 396 IPR011990 GO:0005515
Gso17g1679 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 40 70 IPR002885 -
Gso17g1679 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 260 IPR002885 -
Gso17g1679 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Gso17g1679 554 ProSiteProfiles CBS domain profile. 478 546 IPR000644 -
Gso17g1679 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Gso17g1679 554 Pfam Pentatricopeptide repeat domain 220 259 IPR002885 -
Gso17g1679 554 PANTHER OS09G0431600 PROTEIN 15 547 IPR044781 -
Gso17g1679 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1679 Gso-Chr17 31424598 31438664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1679 40 424 Glycosyltransferase AT1G05670 22.967 5.78e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1679 - - gsj:114391637 1105.89