Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1003 ATGACAGATGCAAAGCCAGATAAACCCTTGATGGCATCTTCATCGCGAAACCTTCCTGATTTCAAGAAGTCTGTTAAGTTGAAGTATGTCAAGCTTGGTTATCATTACCTCATCACCCATGGAATGTACCTCTGCCTTTCCCCCCTTGTGGTGCTGATTGCAGCCCAGCTTTCTACCTTCTCCCTCCGAGACTTGTATGATCTTTGGGAGCATCTACAATACAACTTGATATCTGTTATTCTTTGCTTAACTCTCCTTGTTTTCCTGTCCACCCTCTACTTTCTAACTCGTCCTCGACCTGTGTACCTTGTCAATTTCTCCTGTTACAAGCCTGAAGAATCTCGGAAGTGCACGAAAAAAATATTTATAGAGCAGTCCCGGTTGACCAGTTCTTTCACGGAGGAAAATCTTGAATTCCAGCGGAAGATTCTTGAGAGATCTGGCCTTGGGGAGAACACTTACCTTCCTGAGGCCGTCCTCAACATTCCTCCCAACCCTTCAATGAAAGAAGCTAGAAAAGAAGCCGAGACCGTGATGTTTGGTGCCATTGATGAGCTTTTAGCTAAAACCGCTGTAAAGCCTAAATACATTGGAATTCTGATTGTAAATTGTAGTCTGTTCAACCCTACTCCATCACTTTCGGCAATGATTGTCAATCATTACAAGCTTCGGGGAAATATAAAGAGCTACAATCTTGGTGGGATGGGTTGCAGTGCCGGGCTTATCTCAATTGATCTTGCTAAAGATCTTCTCCAAGCCAATCCCAACTCCTATGCATTGGTCATTAGCATGGAGAATATCACGTTGAATTGGTATTTTGGAAACGATCGGTCAAAGCTTGTCTCTAATTGTTTATTTCGTATGGGAGGAGCTGCAGTTCTGCTCTCCAATAAAAGCTCGGATAGAAGAAGATCCAAATACCGATTGGTCACCACGGTTCGCACTCATAAGGGTGCTGATGAAAAGTGCTTTAGCTGTGTAACCCAAGAAGAAGATGCTAATGGCAAGGTTGGTGTTACTTTGTCAAAAGATTTGATGGCGGTTGCTGGTGATGCTTTAAAAACCAATATCACTACACTGGGGCCTCTTGTACTTCCAACATCTGAACAGCTGCTATTCTTTGCCACATTAGTAGGGAAGAAAATTTTCAAGATGAAGATCAAACCTTATATTCCAGATTTCAAACTAGCTTTTGAACACTTTTGCATCCATGCTGGTGGTAGAGCTGTTTTGGATGAACTGGAGAAAAACTTGCAGCTATCTCCTTGGCATATGGAGCCTTCAAGAATGACACTCTATCGATTCGGAAACACCTCCAGCAGTTCACTTTGGTATGAGCTGGCTTACACTGAGGCCAAAGGGAGGATCAAAAAGGGAGACAGAACATGGCAAATTGCATTCGGTTCTGGATTCAAGTGTAACAGTGCAGTGTGGAAGGCTCTCAGGACCATCAACCCTGCTAAAGAGAAAAGTCCTTGGATTGATGAGATCGACCAGTTTCCAGTCGATGTTCCTAGGGTATCTACCATTTAA 1533 0.4331 MTDAKPDKPLMASSSRNLPDFKKSVKLKYVKLGYHYLITHGMYLCLSPLVVLIAAQLSTFSLRDLYDLWEHLQYNLISVILCLTLLVFLSTLYFLTRPRPVYLVNFSCYKPEESRKCTKKIFIEQSRLTSSFTEENLEFQRKILERSGLGENTYLPEAVLNIPPNPSMKEARKEAETVMFGAIDELLAKTAVKPKYIGILIVNCSLFNPTPSLSAMIVNHYKLRGNIKSYNLGGMGCSAGLISIDLAKDLLQANPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAVLLSNKSSDRRRSKYRLVTTVRTHKGADEKCFSCVTQEEDANGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFATLVGKKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPAKEKSPWIDEIDQFPVDVPRVSTI* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1003 510 CDD CHS_like 83 478 - -
Gso17g1003 510 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 399 479 IPR013747 -
Gso17g1003 510 Pfam FAE1/Type III polyketide synthase-like protein 93 381 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gso17g1003 510 SUPERFAMILY Thiolase-like 286 482 IPR016039 GO:0016746
Gso17g1003 510 PANTHER 3-KETOACYL-COA SYNTHASE 3 509 - -
Gso17g1003 510 PIRSF Very_long_ch_3-ktacl-CoA_syn 20 510 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gso17g1003 510 Gene3D - 104 480 IPR016039 GO:0016746
Gso17g1003 510 SUPERFAMILY Thiolase-like 87 305 IPR016039 GO:0016746
Gso17g1003 510 PANTHER 3-KETOACYL-COA SYNTHASE 3 509 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1003 Gso-Chr17 9406691 9409957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1003 3 510 Miscellaneous Gene Families AT2G26640 85.039 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1003 K15397 - gmx:100783247 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1003 17 9406691 9409957 Gso17g1003 17 9406691 9409957 ECH
Gso17g1003 17 9406691 9409957 Gso4g1245 4 30842645 30845509 PCT