Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0266 ATGGCGGAGAAACACAACCTTAAGAATCCAGCTGTGAAGCGGATTCTCCAAGAGCTCAAGGAGATGCAATCAAACCCTTCCGATGACTACCTGAGCCTCCCTCTTGAGGAAAATATATTTGAATGGCAATTTGCTATAAGGGGGCCTCGTGATACTGAATTTGAAGGTGGTATTTATCACGGACGGATTCAGCTGCCTTCAGAATATCCCTTCAAACCTCCTTCGTTTATGTTGCTCACACCTAGTGGCCGTTTTGAGACACAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTAAGGACTGCTTTAGTCGCCCTGATTGCATTCATGCCCACCAACCCAAATGGCGCGTTGGGCTCATTAAACTACAAGAAAGAAGACAGGCGTGCCTTGGCCATTAAATCCCGTGAAGCACCTCCAAAATTTGGGACTCCTGAACGTCAAAGACTGATTGATGAGATACACGAGTATATGCTAAGCAAGTCATCCCCCGTTCCACAACTTGCCCCCTCACAAGTTTCTGAAGAACATTCCAAAACTGAGGAGGCTGAGGCTGAGGCCCAGGTTAATTTACATAATCCTGAAGCTTTACCTGCGGGAGTGGAGATTCCAGATCAAGCAGGCGACAGAGATGTTGAAGAACAAGAACTCCCTGTCAATGTTAATTCTAACCCTGCAGGAGTTGAAGCTTCAATGGATAATTCATCCAGCGGCTCAAGTAACCAGTTGCTCCAAAAGTCAGATGCAAGGGTTCAAAATCTGAAACCAGAGACAAGGATTCAAAAATCTGACGATCGATTGTTTACACTTGCTGCTATTGGGCTTACTATAGCAATTGTGGTTCTTTTGCTGAAGAAGTTCATTAAATCTACAGAATATGGTGCTGTTTTCATGGATGAATCTTAG 936 0.4466 MAEKHNLKNPAVKRILQELKEMQSNPSDDYLSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPSGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLNYKKEDRRALAIKSREAPPKFGTPERQRLIDEIHEYMLSKSSPVPQLAPSQVSEEHSKTEEAEAEAQVNLHNPEALPAGVEIPDQAGDRDVEEQELPVNVNSNPAGVEASMDNSSSGSSNQLLQKSDARVQNLKPETRIQKSDDRLFTLAAIGLTIAIVVLLLKKFIKSTEYGAVFMDES* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0266 311 SUPERFAMILY UBC-like 11 129 IPR016135 -
Gso17g0266 311 MobiDBLite consensus disorder prediction 171 212 - -
Gso17g0266 311 SMART ubc_7 13 173 - -
Gso17g0266 311 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Gso17g0266 311 CDD UBCc 12 151 IPR000608 -
Gso17g0266 311 Gene3D Ubiquitin Conjugating Enzyme 1 202 IPR016135 -
Gso17g0266 311 PANTHER BNAC01G21910D PROTEIN 6 311 - -
Gso17g0266 311 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 311 - -
Gso17g0266 311 MobiDBLite consensus disorder prediction 232 260 - -
Gso17g0266 311 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0266 Gso-Chr17 2406486 2412525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0266 3 310 Miscellaneous Gene Families AT3G17000 61.801 6.20e-134 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0266 K10578 - gmx:100804291 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0266 17 2406486 2412525 Gso17g0266 17 2406486 2412525 ECH